Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2877360..2877631 | Replicon | chromosome |
| Accession | NZ_LS992185 | ||
| Organism | Escherichia coli isolate Escherichia coli str. 3426 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2877398..2877501 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2877360..2877631 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EC3426_RS14125 | 2874517..2875956 | + | 1440 | WP_001352260.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| EC3426_RS14130 | 2876074..2876310 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| EC3426_RS14135 | 2876415..2876606 | + | 192 | WP_000457842.1 | YebW family protein | - |
| EC3426_RS14140 | 2876607..2877263 | - | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| - | 2877360..2877631 | + | 272 | - | - | Antitoxin |
| - | 2877398..2877501 | - | 104 | - | - | Toxin |
| EC3426_RS14145 | 2877659..2878000 | - | 342 | WP_000976476.1 | YebY family protein | - |
| EC3426_RS14150 | 2878013..2878885 | - | 873 | WP_000879289.1 | copper homeostasis membrane protein CopD | - |
| EC3426_RS14155 | 2878889..2879263 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| EC3426_RS14160 | 2879402..2879632 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| EC3426_RS14165 | 2879734..2880390 | + | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| EC3426_RS14170 | 2880414..2881076 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T292880 NZ_LS992185:c2877501-2877398 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT292880 NZ_LS992185:2877360-2877631 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATAGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATAGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
