Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2091313..2091456 | Replicon | chromosome |
| Accession | NZ_LS992183 | ||
| Organism | Citrobacter freundii isolate Citrobacter freundii str. U2785 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2091348..2091451 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2091313..2091456 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CFU2785_RS10290 | 2086464..2087366 | - | 903 | WP_003844140.1 | diguanylate cyclase | - |
| CFU2785_RS10300 | 2087686..2087877 | - | 192 | WP_008322661.1 | hypothetical protein | - |
| CFU2785_RS10305 | 2088370..2088960 | - | 591 | WP_125362611.1 | hypothetical protein | - |
| CFU2785_RS10315 | 2089583..2089957 | + | 375 | WP_003034928.1 | CopC domain-containing protein YobA | - |
| CFU2785_RS10320 | 2089961..2090833 | + | 873 | WP_003034931.1 | copper homeostasis membrane protein CopD | - |
| CFU2785_RS10325 | 2090854..2091192 | + | 339 | WP_003034934.1 | YebY family protein | - |
| - | 2091313..2091456 | - | 144 | - | - | Antitoxin |
| - | 2091348..2091451 | + | 104 | - | - | Toxin |
| CFU2785_RS10330 | 2091605..2092246 | + | 642 | WP_003034937.1 | protein-serine/threonine phosphatase | - |
| CFU2785_RS10335 | 2092247..2092438 | - | 192 | WP_003034941.1 | YebW family protein | - |
| CFU2785_RS10340 | 2092541..2092777 | - | 237 | WP_029139506.1 | DUF1480 family protein | - |
| CFU2785_RS10345 | 2092878..2094266 | - | 1389 | WP_197730871.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T292851 NZ_LS992183:2091348-2091451 [Citrobacter freundii]
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 144 bp
>AT292851 NZ_LS992183:c2091456-2091313 [Citrobacter freundii]
CAAATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGT
CAAATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGT
