Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2268117..2268385 | Replicon | chromosome |
| Accession | NZ_LS992180 | ||
| Organism | Escherichia coli isolate Escherichia coli str. TO124 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2268245..2268347 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2268117..2268385 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ECTO124_RS11175 | 2264670..2265332 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| ECTO124_RS11180 | 2265356..2266012 | - | 657 | WP_000011664.1 | carbon-nitrogen hydrolase family protein | - |
| ECTO124_RS11185 | 2266114..2266344 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| ECTO124_RS11190 | 2266483..2266857 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| ECTO124_RS11195 | 2266861..2267733 | + | 873 | WP_000879317.1 | copper homeostasis membrane protein CopD | - |
| ECTO124_RS11200 | 2267746..2268087 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 2268117..2268385 | - | 269 | - | - | Antitoxin |
| - | 2268245..2268347 | + | 103 | - | - | Toxin |
| ECTO124_RS11205 | 2268482..2269138 | + | 657 | WP_000812745.1 | protein-serine/threonine phosphatase | - |
| ECTO124_RS11210 | 2269139..2269330 | - | 192 | WP_001296140.1 | YebW family protein | - |
| ECTO124_RS11215 | 2269435..2269671 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| ECTO124_RS11220 | 2269788..2271227 | - | 1440 | WP_001296139.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T292816 NZ_LS992180:2268245-2268347 [Escherichia coli]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT292816 NZ_LS992180:c2268385-2268117 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATATTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATATTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
