Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2212193..2212336 | Replicon | chromosome |
| Accession | NZ_LS992175 | ||
| Organism | Citrobacter freundii isolate Citrobacter freundii str. E2614 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2212228..2212331 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2212193..2212336 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CFE2614_RS10990 | 2208640..2209302 | - | 663 | WP_003034918.1 | exodeoxyribonuclease X | - |
| CFE2614_RS10995 | 2209326..2209982 | - | 657 | WP_003841657.1 | carbon-nitrogen hydrolase family protein | - |
| CFE2614_RS11000 | 2210089..2210319 | - | 231 | WP_003034925.1 | DNA polymerase III subunit theta | - |
| CFE2614_RS11005 | 2210463..2210837 | + | 375 | WP_003034928.1 | CopC domain-containing protein YobA | - |
| CFE2614_RS11010 | 2210841..2211713 | + | 873 | WP_003034931.1 | copper homeostasis membrane protein CopD | - |
| CFE2614_RS11015 | 2211734..2212072 | + | 339 | WP_044700293.1 | YebY family protein | - |
| - | 2212193..2212336 | - | 144 | - | - | Antitoxin |
| - | 2212228..2212331 | + | 104 | - | - | Toxin |
| CFE2614_RS11020 | 2212485..2213126 | + | 642 | WP_003034937.1 | protein-serine/threonine phosphatase | - |
| CFE2614_RS11025 | 2213127..2213318 | - | 192 | WP_003034941.1 | YebW family protein | - |
| CFE2614_RS11030 | 2213421..2213657 | - | 237 | WP_029139506.1 | DUF1480 family protein | - |
| CFE2614_RS11035 | 2213758..2215146 | - | 1389 | WP_044700319.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 2140241..2220553 | 80312 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T292797 NZ_LS992175:2212228-2212331 [Citrobacter freundii]
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 144 bp
>AT292797 NZ_LS992175:c2212336-2212193 [Citrobacter freundii]
CACATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGT
CACATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGT
