Detailed information of TA system TA029276

Bioinformatically predicted

Overview

TA module

• Type: II
• Classification (family/domain): vapBC/VapC-YefM
• Location: 79114..79829
• Replicon: chromosome
• Accession: NC_020833
• Organism: Mannheimia haemolytica USDA-ARS-USMARC-183

Toxin (Protein)

• Gene name: vapC
• Uniprot ID: -
• Locus tag: D650_RS00390
• Protein ID: WP_006250491.1
• Coordinates: 79114..79542 (-)
• Length: 143 a.a.

Antitoxin (Protein)

• Gene name: vapB
• Uniprot ID: A0A248ZW87
• Locus tag: D650_RS00395
• Protein ID: WP_006248272.1
• Coordinates: 79542..79829 (-)
• Length: 96 a.a.

Genomic Context

Locus tag	Coordinates	Strand	Size (bp)	Protein ID	Product	Description
D650_RS00375	74368..76020	+	1653	WP_006248275.1	phospho-sugar mutase	-
D650_RS00380	76073..77007	+	935	Protein_75	nucleoside hydrolase	-
D650_RS00385	77029..79110	-	2082	WP_006248274.1	ATP-dependent DNA helicase RecG	-
D650_RS00390	79114..79542	-	429	WP_006250491.1	type II toxin-antitoxin system VapC family toxin	Toxin
D650_RS00395	79542..79829	-	288	WP_006248272.1	type II toxin-antitoxin system Phd/YefM family antitoxin	Antitoxin
D650_RS00400	79993..81876	+	1884	WP_006248270.1	molecular chaperone HtpG	-
D650_RS13755	81929..82090	+	162	WP_015483997.1	hypothetical protein	-
D650_RS00405	82254..83969	+	1716	WP_006248268.1	proline--tRNA ligase	-

Associated MGEs

MGE detail	Similar MGEs	Relative position	MGE Type	Cargo ARG	Virulence gene	Coordinates	Length (bp)

Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.

Domains

Predicted by InterproScan

Toxin

• PIN domain (4-129)

Antitoxin

No domain identified.

Sequences

Toxin

Protein

• Length: 143 a.a.
• Molecular weight: 16640.06 Da
• Isoelectric Point: 8.9269

>T29276 WP_006250491.1 NC_020833:c79542-79114 [Mannheimia haemolytica USDA-ARS-USMARC-183]
MYRYLFDTNIVSELYKLRNDKMDVNVRQWLRGVNPSQTNISCITLSEIKTGILLKARKDKEQSDRLNDWFENNVLKAYQT
KAFVVNNDIALLASEYHIPNKMDLNDAYIAATAKYHNLILVTRNTKDFIRCDVRLFNPFETA

Nucleotide

• Length: 429 bp

>T29276 NC_020833:c79542-79114 [Mannheimia haemolytica USDA-ARS-USMARC-183]
ATGTATCGCTACCTTTTTGATACCAATATAGTTTCCGAGCTTTATAAGTTAAGAAATGACAAGATGGATGTCAATGTTCG
CCAGTGGCTGAGAGGGGTTAATCCTAGCCAGACCAATATCAGCTGTATTACGTTATCTGAAATCAAAACAGGTATTTTGC
TGAAAGCCCGCAAAGACAAAGAACAATCAGACCGATTAAATGATTGGTTTGAAAATAATGTATTAAAGGCTTATCAAACA
AAAGCGTTTGTGGTGAATAACGACATTGCTCTATTGGCATCAGAGTACCATATTCCCAATAAAATGGATTTAAATGATGC
TTATATTGCGGCAACCGCCAAATACCACAATCTGATTTTAGTCACCCGCAACACCAAAGATTTTATCCGTTGTGATGTGC
GTTTATTTAACCCATTTGAAACCGCATAA

Antitoxin

Protein

• Length: 96 a.a.
• Molecular weight: 11085.39 Da
• Isoelectric Point: 4.3648

>AT29276 WP_006248272.1 NC_020833:c79829-79542 [Mannheimia haemolytica USDA-ARS-USMARC-183]
MAITITSREFNQNASKVLKMAEKEPVFITKWGKIVNVVSSYMDYQQKKPSEPSFEELFASSENEDVSDEFWQEFEQTLVE
IRKSNKPRPVDFGDE

Nucleotide

• Length: 288 bp

>AT29276 NC_020833:c79829-79542 [Mannheimia haemolytica USDA-ARS-USMARC-183]
ATGGCAATAACCATTACTTCCAGAGAATTTAATCAAAATGCCAGCAAAGTGTTAAAAATGGCAGAAAAAGAGCCGGTTTT
TATTACCAAATGGGGCAAAATCGTCAATGTGGTGTCTAGTTATATGGATTATCAGCAGAAAAAGCCTAGCGAGCCAAGCT
TTGAAGAGCTATTCGCCTCTTCCGAAAATGAGGATGTGAGCGATGAATTTTGGCAAGAGTTTGAACAAACATTGGTTGAA
ATCCGCAAAAGCAATAAACCAAGACCTGTTGATTTTGGAGATGAGTAA

Structures

Antitoxin

• AlphaFold DB: A0A248ZW87