Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) ccdAB/CcdA(antitoxin)
Location 4110467..4110987 Replicon chromosome
Accession NZ_LS992168
Organism Escherichia coli isolate Escherichia coli str. TO60

Toxin (Protein)


Gene name ccdB Uniprot ID A0A061KX66
Locus tag ECTO60_RS20525 Protein ID WP_001160964.1
Coordinates 4110467..4110751 (-) Length 95 a.a.

Antitoxin (Protein)


Gene name ccdA Uniprot ID V0VEX8
Locus tag ECTO60_RS20530 Protein ID WP_000125566.1
Coordinates 4110754..4110987 (-) Length 78 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
ECTO60_RS20500 4106112..4107398 + 1287 WP_000800457.1 peptidylprolyl isomerase SurA -
ECTO60_RS20505 4107398..4108387 + 990 WP_000241227.1 4-hydroxythreonine-4-phosphate dehydrogenase PdxA -
ECTO60_RS20510 4108384..4109205 + 822 WP_001065365.1 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA -
ECTO60_RS20515 4109208..4109585 + 378 WP_000610901.1 Co2+/Mg2+ efflux protein ApaG -
ECTO60_RS20520 4109592..4110440 + 849 WP_000257181.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) ApaH -
ECTO60_RS20525 4110467..4110751 - 285 WP_001160964.1 CcdB family protein Toxin
ECTO60_RS20530 4110754..4110987 - 234 WP_000125566.1 type II toxin-antitoxin system CcdA family antitoxin Antitoxin
ECTO60_RS20535 4111073..4111552 - 480 WP_000624375.1 type 3 dihydrofolate reductase -
ECTO60_RS20540 4111744..4113606 - 1863 WP_000377106.1 glutathione-regulated potassium-efflux system protein KefC -
ECTO60_RS20545 4113599..4114129 - 531 WP_000600725.1 glutathione-regulated potassium-efflux system oxidoreductase KefF -
ECTO60_RS20550 4114237..4115568 - 1332 WP_001183209.1 MFS transporter -
ECTO60_RS20555 4115627..4115914 - 288 WP_000203744.1 ferredoxin-like protein FixX -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin CcdB

(2-93)

Antitoxin

Post-segregation antitoxin CcdA

(8-77)


Sequences

Toxin        


Download         Length: 95 a.a.        Molecular weight: 10692.54 Da        Isoelectric Point: 10.3030

>T292743 WP_001160964.1 NZ_LS992168:c4110751-4110467 [Escherichia coli]
MQFTVYRSRGRNAAFPFVIDVTSDIIGEINRRIVIPLTPIERFSRIRPPERLNPILLLIDGKEYVLMTHETATVPVNALG
TKFCDASAHRTLIK

Download         Length: 285 bp

Antitoxin


Download         Length: 78 a.a.        Molecular weight: 8530.53 Da        Isoelectric Point: 5.8062

>AT292743 WP_000125566.1 NZ_LS992168:c4110987-4110754 [Escherichia coli]
MTAKRTTQSVTVTVDRELVNRARDAGLNMSATLTVALNAELKKHAATRWREENAEAIAALNQLADETGCFSDEYRSF

Download         Length: 234 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB A0A061KX66

Antitoxin

Source ID Structure
AlphaFold DB A0A7U9LTM9

References