Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2118487..2118601 | Replicon | chromosome |
| Accession | NZ_LS483492 | ||
| Organism | Serratia rubidaea strain NCTC10848 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2118504..2118600 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2118487..2118601 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DQN11_RS09875 | 2114120..2115079 | + | 960 | WP_111736933.1 | prolyl aminopeptidase | - |
| DQN11_RS09880 | 2115119..2115349 | - | 231 | WP_105231475.1 | DNA polymerase III subunit theta | - |
| DQN11_RS09885 | 2115737..2116258 | + | 522 | WP_105231474.1 | non-heme ferritin | - |
| DQN11_RS09890 | 2116684..2117067 | + | 384 | WP_111736934.1 | CopC domain-containing protein YobA | - |
| DQN11_RS09895 | 2117071..2117952 | + | 882 | WP_111736935.1 | copper homeostasis membrane protein CopD | - |
| DQN11_RS09900 | 2118021..2118362 | + | 342 | WP_111736936.1 | YebY family protein | - |
| - | 2118487..2118601 | - | 115 | - | - | Antitoxin |
| - | 2118504..2118600 | + | 97 | - | - | Toxin |
| DQN11_RS09905 | 2118891..2119373 | - | 483 | WP_145961119.1 | YrhA family protein | - |
| DQN11_RS09910 | 2119382..2120543 | - | 1162 | Protein_1931 | HNH endonuclease | - |
| DQN11_RS09915 | 2120758..2121849 | - | 1092 | WP_105231468.1 | Rieske 2Fe-2S domain-containing protein | - |
| DQN11_RS09920 | 2121874..2123577 | - | 1704 | WP_111736937.1 | tryptophan 7-halogenase | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 97 bp
>T292656 NZ_LS483492:2118504-2118600 [Serratia rubidaea]
AACAAGCCCTGCAATAAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATAGGAATC
GTATTCGGTCTTTTTTT
AACAAGCCCTGCAATAAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATAGGAATC
GTATTCGGTCTTTTTTT
Antitoxin
Download Length: 115 bp
>AT292656 NZ_LS483492:c2118601-2118487 [Serratia rubidaea]
TAAAAAAAGACCGAATACGATTCCTATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCA
TTTATTGCAGGGCTTGTTCAGCCATGCACTTTAAG
TAAAAAAAGACCGAATACGATTCCTATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCA
TTTATTGCAGGGCTTGTTCAGCCATGCACTTTAAG
