Detailed information of TA system TA029261

Bioinformatically predicted

Overview

TA module

• Type: II
• Classification (family/domain): relBE/Phd(antitoxin)
• Location: 560954..561498
• Replicon: chromosome
• Accession: NC_020815
• Organism: Xanthomonas citri subsp. citri Aw12879

Toxin (Protein)

• Gene name: relE
• Uniprot ID: H8FI26
• Locus tag: XCAW_RS02290
• Protein ID: WP_003487886.1
• Coordinates: 561199..561498 (+)
• Length: 100 a.a.

Antitoxin (Protein)

• Gene name: relB
• Uniprot ID: H8FI25
• Locus tag: XCAW_RS02285
• Protein ID: WP_003487884.1
• Coordinates: 560954..561211 (+)
• Length: 86 a.a.

Genomic Context

Locus tag	Coordinates	Strand	Size (bp)	Protein ID	Product	Description
XCAW_RS02270	556055..557554	-	1500	WP_040237593.1	ribonuclease H-like domain-containing protein	-
XCAW_RS02275	557551..560046	-	2496	WP_015471525.1	DEAD/DEAH box helicase	-
XCAW_RS02280	560224..560886	+	663	WP_005912558.1	hemolysin III family protein	-
XCAW_RS02285	560954..561211	+	258	WP_003487884.1	type II toxin-antitoxin system Phd/YefM family antitoxin	Antitoxin
XCAW_RS02290	561199..561498	+	300	WP_003487886.1	type II toxin-antitoxin system RelE/ParE family toxin	Toxin
XCAW_RS02295	561678..562577	-	900	WP_015471526.1	SDR family NAD(P)-dependent oxidoreductase	-
XCAW_RS02300	562637..563374	-	738	WP_015471527.1	SDR family oxidoreductase	-
XCAW_RS02305	563500..564411	+	912	WP_011050074.1	LysR family transcriptional regulator	-
XCAW_RS02310	564577..565650	-	1074	WP_040107715.1	hypothetical protein	-

Associated MGEs

MGE detail	Similar MGEs	Relative position	MGE Type	Cargo ARG	Virulence gene	Coordinates	Length (bp)

Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.

Domains

Predicted by InterproScan

Toxin

• Toxin-antitoxin system, RelE/ParE toxin family (4-91)

Antitoxin

• Type II toxin-antitoxin system, antitoxin Phd/YefM (1-73)

Sequences

Toxin

Protein

• Length: 100 a.a.
• Molecular weight: 11231.97 Da
• Isoelectric Point: 9.7235

>T29261 WP_003487886.1 NC_020815:561199-561498 [Xanthomonas citri subsp. citri Aw12879]
MAEIIWSVPALADLDAIADYIAIDNAPAAAALVKRVFGHVEQLIEHPDSGSRPQELKRSRYRQIVEPPCRVFYRVDGQRI
VVVHVMRSERALRGNRLSR

Nucleotide

• Length: 300 bp

>T29261 NC_020815:561199-561498 [Xanthomonas citri subsp. citri Aw12879]
ATGGCTGAAATAATCTGGTCGGTGCCGGCATTGGCTGATCTGGACGCAATTGCCGACTACATCGCAATCGATAACGCACC
CGCTGCAGCGGCGCTGGTGAAACGGGTGTTCGGGCACGTTGAGCAATTGATCGAACACCCGGACAGCGGAAGCCGACCAC
AGGAACTCAAGCGCTCGCGCTATCGCCAGATTGTCGAACCACCTTGCCGCGTGTTCTACCGCGTGGATGGGCAGCGCATC
GTGGTGGTGCACGTCATGCGGTCGGAGCGCGCGCTTCGCGGGAACCGTCTTTCACGCTAA

Antitoxin

Protein

• Length: 86 a.a.
• Molecular weight: 9683.21 Da
• Isoelectric Point: 9.8274

>AT29261 WP_003487884.1 NC_020815:560954-561211 [Xanthomonas citri subsp. citri Aw12879]
MRTELVTTLKRQATELLAAAERDKEPILITQHGLPSAYLVDVASYERMQQRIALLEGIARGEMAVAEGRTLSHEQARHRM
ARWLK

Nucleotide

• Length: 258 bp

>AT29261 NC_020815:560954-561211 [Xanthomonas citri subsp. citri Aw12879]
ATGCGCACCGAACTTGTCACCACGCTCAAGCGTCAGGCGACCGAACTCCTTGCAGCTGCAGAGCGCGACAAGGAGCCAAT
CCTGATCACACAGCACGGTTTACCCAGTGCCTATCTGGTGGATGTTGCCAGCTATGAGCGCATGCAGCAGCGCATTGCGC
TCCTCGAAGGAATCGCCCGTGGAGAAATGGCAGTCGCGGAAGGCCGTACGCTGAGCCATGAACAGGCACGGCACCGCATG
GCGCGATGGCTGAAATAA

Structures

Toxin

• AlphaFold DB: H8FI26

Antitoxin

• AlphaFold DB: H8FI25