Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relBE/RelE(toxin)
Location 3158495..3158945 Replicon chromosome
Accession NZ_LS483470
Organism Leminorella richardii strain NCTC12151

Toxin (Protein)


Gene name relE Uniprot ID -
Locus tag DQM29_RS14465 Protein ID WP_111741344.1
Coordinates 3158495..3158764 (-) Length 90 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID -
Locus tag DQM29_RS14470 Protein ID WP_111742112.1
Coordinates 3158754..3158945 (-) Length 64 a.a.

Genomic Context

DQM29_RS14435DQM29_RS14440DQM29_RS14450DQM29_RS14475DQM29_RS14480DQM29_RS14445DQM29_RS14455DQM29_RS14460DQM29_RS14465DQM29_RS14470DQM29_RS14485DQM29_RS14490
Location: 3155536..3156000 (465 bp)
Type: Others
Protein ID: WP_111741338.1
Location: 3156020..3156430 (411 bp)
Type: Others
Protein ID: WP_111741339.1
Location: 3157009..3157326 (318 bp)
Type: Others
Protein ID: WP_111741341.1
Location: 3159173..3160168 (996 bp)
Type: Others
Protein ID: WP_111741345.1
Location: 3160182..3161063 (882 bp)
Type: Others
Protein ID: WP_111741346.1
Location: 3156442..3156897 (456 bp)
Type: Others
Protein ID: WP_111741340.1
Location: 3157328..3157831 (504 bp)
Type: Others
Protein ID: WP_111741342.1
Location: 3157825..3158346 (522 bp)
Type: Others
Protein ID: WP_111741343.1
Location: 3158495..3158764 (270 bp)
Type: Toxin
Protein ID: WP_111741344.1
Location: 3158754..3158945 (192 bp)
Type: Antitoxin
Protein ID: WP_111742112.1
Location: 3161166..3162050 (885 bp)
Type: Others
Protein ID: WP_111741347.1
Location: 3162199..3162963 (765 bp)
Type: Others
Protein ID: WP_145960376.1
ToxinAntitoxinOther genes
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Locus tag
Coordinates
Strand
Size (bp)
Protein ID
Product
Description
DQM29_RS144353155536..3156000+465WP_111741338.1anaerobic ribonucleoside-triphosphate reductase-activating protein-
DQM29_RS144403156020..3156430+411WP_111741339.1DUF2251 domain-containing protein-
DQM29_RS144453156442..3156897-456WP_111741340.1YhbP family protein-
DQM29_RS144503157009..3157326+318WP_111741341.1GIY-YIG nuclease family protein-
DQM29_RS144553157328..3157831-504WP_111741342.1N-acetyltransferase-
DQM29_RS144603157825..3158346-522WP_111741343.1SCP2 domain-containing protein-
DQM29_RS144653158495..3158764-270WP_111741344.1type II toxin-antitoxin system RelE/ParE family toxinToxin
DQM29_RS144703158754..3158945-192WP_111742112.1antitoxinAntitoxin
DQM29_RS144753159173..3160168+996WP_111741345.1U32 family peptidase-
DQM29_RS144803160182..3161063+882WP_111741346.1U32 family peptidase-
DQM29_RS144853161166..3162050-885WP_111741347.1sel1 repeat family protein-
DQM29_RS144903162199..3162963-765WP_145960376.1hypothetical protein-

Associated MGEs

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MGE
detail
Similar
MGEs
Relative
position
MGE Type
Cargo ARG
Virulence gene
Coordinates
Length (bp)
No matching records found


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(3-83)

Antitoxin


No domain identified.



Sequences

Toxin        


Download         Length: 90 a.a.        Molecular weight: 10673.07 Da        Isoelectric Point: 4.7869

>T292606 WP_111741344.1 NZ_LS483470:c3158764-3158495 [Leminorella richardii]
MWVEWTDDAQEELWAIIDYIDDYNSQAAFQLYRDIIAATEALLSYPYRHRQGRVLSTREIVVHPNYIVVYRISDRIEILS
VLHAKREYP

Download         Length: 270 bp

Antitoxin


Download         Length: 64 a.a.        Molecular weight: 7265.21 Da        Isoelectric Point: 8.6809

>AT292606 WP_111742112.1 NZ_LS483470:c3158945-3158754 [Leminorella richardii]
MTIKPSPTESEFETQEQANSYDRWFRAKVEAAMNSAKPRIPHEQVIAEIQVRLDAKRKVHNVG

Download         Length: 192 bp


Similar Proteins

Only experimentally validated proteins are listed.

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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found
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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found

Structures

Toxin

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Source
ID
Structure
No matching records found

Antitoxin

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Source
ID
Structure
No matching records found

References