292606

Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relBE/RelE(toxin)
Location 3158495..3158945 Replicon chromosome
Accession NZ_LS483470
Organism Leminorella richardii strain NCTC12151

Toxin (Protein)


Gene name relE Uniprot ID -
Locus tag DQM29_RS14465 Protein ID WP_111741344.1
Coordinates 3158495..3158764 (-) Length 90 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID -
Locus tag DQM29_RS14470 Protein ID WP_111742112.1
Coordinates 3158754..3158945 (-) Length 64 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
DQM29_RS14435 3155536..3156000 + 465 WP_111741338.1 anaerobic ribonucleoside-triphosphate reductase-activating protein -
DQM29_RS14440 3156020..3156430 + 411 WP_111741339.1 DUF2251 domain-containing protein -
DQM29_RS14445 3156442..3156897 - 456 WP_111741340.1 YhbP family protein -
DQM29_RS14450 3157009..3157326 + 318 WP_111741341.1 GIY-YIG nuclease family protein -
DQM29_RS14455 3157328..3157831 - 504 WP_111741342.1 N-acetyltransferase -
DQM29_RS14460 3157825..3158346 - 522 WP_111741343.1 SCP2 domain-containing protein -
DQM29_RS14465 3158495..3158764 - 270 WP_111741344.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
DQM29_RS14470 3158754..3158945 - 192 WP_111742112.1 antitoxin Antitoxin
DQM29_RS14475 3159173..3160168 + 996 WP_111741345.1 U32 family peptidase -
DQM29_RS14480 3160182..3161063 + 882 WP_111741346.1 U32 family peptidase -
DQM29_RS14485 3161166..3162050 - 885 WP_111741347.1 sel1 repeat family protein -
DQM29_RS14490 3162199..3162963 - 765 WP_145960376.1 hypothetical protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(3-83)

Antitoxin


No domain identified.



Sequences

Toxin        


Download         Length: 90 a.a.        Molecular weight: 10673.07 Da        Isoelectric Point: 4.7869

>T292606 WP_111741344.1 NZ_LS483470:c3158764-3158495 [Leminorella richardii]
MWVEWTDDAQEELWAIIDYIDDYNSQAAFQLYRDIIAATEALLSYPYRHRQGRVLSTREIVVHPNYIVVYRISDRIEILS
VLHAKREYP

Download         Length: 270 bp

Antitoxin


Download         Length: 64 a.a.        Molecular weight: 7265.21 Da        Isoelectric Point: 8.6809

>AT292606 WP_111742112.1 NZ_LS483470:c3158945-3158754 [Leminorella richardii]
MTIKPSPTESEFETQEQANSYDRWFRAKVEAAMNSAKPRIPHEQVIAEIQVRLDAKRKVHNVG

Download         Length: 192 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References