Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) sanaTA/AbiEii-DUF6088
Location 837207..838545 Replicon chromosome
Accession NZ_LS483470
Organism Leminorella richardii strain NCTC12151

Toxin (Protein)


Gene name sanaT Uniprot ID -
Locus tag DQM29_RS03895 Protein ID WP_111739402.1
Coordinates 837207..838157 (-) Length 317 a.a.

Antitoxin (Protein)


Gene name sanaA Uniprot ID -
Locus tag DQM29_RS03900 Protein ID WP_111739403.1
Coordinates 838150..838545 (-) Length 132 a.a.

Genomic Context

DQM29_RS03880DQM29_RS03925DQM29_RS03930DQM29_RS03885DQM29_RS03890DQM29_RS03895DQM29_RS03900DQM29_RS03905DQM29_RS03915DQM29_RS03920
Location: 833230..833685 (456 bp)
Type: Others
Protein ID: WP_111739399.1
Location: 841180..842067 (888 bp)
Type: Others
Protein ID: WP_111739406.1
Location: 842122..842985 (864 bp)
Type: Others
Protein ID: WP_111739407.1
Location: 833830..835047 (1218 bp)
Type: Others
Protein ID: WP_170126485.1
Location: 835239..835904 (666 bp)
Type: Others
Protein ID: WP_111739401.1
Location: 837207..838157 (951 bp)
Type: Toxin
Protein ID: WP_111739402.1
Location: 838150..838545 (396 bp)
Type: Antitoxin
Protein ID: WP_111739403.1
Location: 838616..838848 (233 bp)
Type: Others
Protein ID: Protein_763
Location: 839245..840036 (792 bp)
Type: Others
Protein ID: WP_111739404.1
Location: 840085..840981 (897 bp)
Type: Others
Protein ID: WP_111739405.1
ToxinAntitoxinOther genes
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Locus tag
Coordinates
Strand
Size (bp)
Protein ID
Product
Description
DQM29_RS03880833230..833685+456WP_111739399.1GNAT family N-acetyltransferase-
DQM29_RS03885833830..835047-1218WP_170126485.1sensor histidine kinase-
DQM29_RS03890835239..835904-666WP_111739401.1response regulator-
DQM29_RS03895837207..838157-951WP_111739402.1nucleotidyl transferase AbiEii/AbiGii toxin family proteinToxin
DQM29_RS03900838150..838545-396WP_111739403.1type IV toxin-antitoxin system AbiEi family antitoxin domain-containing proteinAntitoxin
DQM29_RS03905838616..838848-233Protein_763DUF4942 domain-containing protein-
DQM29_RS03915839245..840036-792WP_111739404.1DeoR/GlpR family DNA-binding transcription regulator-
DQM29_RS03920840085..840981-897WP_111739405.1sugar kinase-
DQM29_RS03925841180..842067+888WP_111739406.1sulfolactaldehyde 3-reductase-
DQM29_RS03930842122..842985+864WP_111739407.1class II fructose-bisphosphate aldolase-

Associated MGEs

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MGE
detail
Similar
MGEs
Relative
position
MGE Type
Cargo ARG
Virulence gene
Coordinates
Length (bp)
No matching records found


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Nucleotidyl transferase AbiEii toxin, Type IV TA system

(34-303)

Antitoxin

Protein of unknown function DUF6088

(7-108)


Sequences

Toxin        


Download         Length: 317 a.a.        Molecular weight: 35382.52 Da        Isoelectric Point: 4.8402

>T292600 WP_111739402.1 NZ_LS483470:c838157-837207 [Leminorella richardii]
MDDLNVLFSDVADALGIESVAIVEKDHYIVELLRLLKQLTFDTHQLVFAGGTALAKSGVALNRMSEDVDIKLVPTAAFQA
LSRNQRKNTRKAIVLAISGAITTTDVFSFDDDYPKVTRDEYCYSDIPVRYPQRVAQAPCLRPFIRLELMESNLLEPPEPR
DIHSLITALTGKAPVVSAFPCATVANTQAEKLVAMLRRTAAIVRDVERFDDASLVRHIYDTYCIVEAGGVNMPLLTDYVQ
RTIEQDIQRYGSQYPQFCTSPIDELKMGLDELACNPLYQTRYQQFVAPMVYGARKASWDEAYASFRQIALAILNAD

Download         Length: 951 bp

Antitoxin


Download         Length: 132 a.a.        Molecular weight: 14540.73 Da        Isoelectric Point: 10.9903

>AT292600 WP_111739403.1 NZ_LS483470:c838545-838150 [Leminorella richardii]
MTIKARIQSRLKRSKRYVFTRDDFKDIAGYDQVGRVLRDLIKEGQLLKVGYGVYTKARQNSITGKVMPAAPGGSSAVIVE
TLERLKVRYRLAEETQAYNSGNSTQIPASPEIKTSSRFKRALSVGSSKLNG

Download         Length: 396 bp


Similar Proteins

Only experimentally validated proteins are listed.

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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found
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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found

Structures

Toxin

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Source
ID
Structure
No matching records found

Antitoxin

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Source
ID
Structure
No matching records found

References