Detailed information of TA system
Bioinformatically predictedOverview
TA module
Type | II | Classification (family/domain) | relBE/RelE(toxin) |
Location | 846835..847327 | Replicon | chromosome |
Accession | NZ_LS483418 | ||
Organism | Streptococcus suis strain NCTC10234 |
Toxin (Protein)
Gene name | relE | Uniprot ID | D5AHJ6 |
Locus tag | DQM62_RS04265 | Protein ID | WP_011922404.1 |
Coordinates | 846835..847092 (-) | Length | 86 a.a. |
Antitoxin (Protein)
Gene name | relB | Uniprot ID | D5AHJ7 |
Locus tag | DQM62_RS04270 | Protein ID | WP_012775104.1 |
Coordinates | 847076..847327 (-) | Length | 84 a.a. |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
DQM62_RS04245 | 842469..843539 | + | 1071 | WP_012775101.1 | tyrosine recombinase XerS | - |
DQM62_RS04250 | 843609..845117 | - | 1509 | WP_011922400.1 | phosphomannomutase/phosphoglucomutase | - |
DQM62_RS04255 | 845193..846134 | - | 942 | WP_012775102.1 | sensor histidine kinase | - |
DQM62_RS04260 | 846131..846796 | - | 666 | WP_012775103.1 | response regulator transcription factor | - |
DQM62_RS04265 | 846835..847092 | - | 258 | WP_011922404.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin |
DQM62_RS04270 | 847076..847327 | - | 252 | WP_012775104.1 | hypothetical protein | Antitoxin |
DQM62_RS04275 | 847419..849389 | - | 1971 | WP_012775105.1 | FtsX-like permease family protein | - |
DQM62_RS04280 | 849390..850142 | - | 753 | WP_011922409.1 | ABC transporter ATP-binding protein | - |
DQM62_RS04285 | 850278..851012 | - | 735 | WP_011922410.1 | ABC transporter permease | - |
DQM62_RS04290 | 851014..851760 | - | 747 | WP_011922411.1 | ABC transporter permease | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Similar Proteins
Only experimentally validated proteins are listed.
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
---|
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
---|
Structures
Toxin
Source | ID | Structure |
---|---|---|
AlphaFold DB | A0A0Z8U747 |
Antitoxin
Source | ID | Structure |
---|---|---|
AlphaFold DB | A0A0Z9GU89 |