Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1694041..1694151 | Replicon | chromosome |
| Accession | NC_020796 | ||
| Organism | Edwardsiella tarda C07-087 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1694048..1694149 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1694041..1694151 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ETAC_RS17535 | 1689672..1690886 | - | 1215 | WP_015461417.1 | DUF1028 domain-containing protein | - |
| ETAC_RS07515 | 1691929..1692225 | - | 297 | WP_012848441.1 | antibiotic biosynthesis monooxygenase | - |
| ETAC_RS07520 | 1692267..1692662 | - | 396 | WP_015461418.1 | VOC family protein | - |
| ETAC_RS17540 | 1692884..1693165 | - | 282 | WP_015461419.1 | ribbon-helix-helix domain-containing protein | - |
| ETAC_RS07525 | 1693445..1693957 | - | 513 | WP_200860327.1 | tyrosine-type recombinase/integrase | - |
| - | 1694041..1694151 | - | 111 | - | - | Antitoxin |
| - | 1694048..1694149 | + | 102 | - | - | Toxin |
| ETAC_RS07530 | 1695171..1695728 | + | 558 | WP_012848483.1 | Ail/Lom family outer membrane beta-barrel protein | - |
| ETAC_RS07535 | 1695816..1696175 | + | 360 | WP_012848484.1 | hypothetical protein | - |
| ETAC_RS07540 | 1696202..1696936 | - | 735 | WP_109615132.1 | hypothetical protein | - |
| ETAC_RS07545 | 1697084..1697557 | - | 474 | WP_012848486.1 | NifB/NifX family molybdenum-iron cluster-binding protein | - |
| ETAC_RS07550 | 1697568..1697846 | - | 279 | WP_015461422.1 | DUF134 domain-containing protein | - |
| ETAC_RS07555 | 1697904..1698527 | - | 624 | WP_015461423.1 | response regulator transcription factor | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 102 bp
>T29243 NC_020796:1694048-1694149 [Edwardsiella piscicida C07-087]
GCAAGGCACTCAATGCCTGCATAATGCCAACTTTTAGCGCACGGCTCTCCAAAAGAGCCATTCCCCTAGACCTGACACAG
GAATCGTGTTAGGTCTTTTTTT
GCAAGGCACTCAATGCCTGCATAATGCCAACTTTTAGCGCACGGCTCTCCAAAAGAGCCATTCCCCTAGACCTGACACAG
GAATCGTGTTAGGTCTTTTTTT
Antitoxin
Download Length: 111 bp
>AT29243 NC_020796:c1694151-1694041 [Edwardsiella piscicida C07-087]
ATAAAAAAAGACCTAACACGATTCCTGTGTCAGGTCTAGGGGAATGGCTCTTTTGGAGAGCCGTGCGCTAAAAGTTGGCA
TTATGCAGGCATTGAGTGCCTTGCTCTATAA
ATAAAAAAAGACCTAACACGATTCCTGTGTCAGGTCTAGGGGAATGGCTCTTTTGGAGAGCCGTGCGCTAAAAGTTGGCA
TTATGCAGGCATTGAGTGCCTTGCTCTATAA
