Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) parDE/RelB(antitoxin)
Location 1596565..1597177 Replicon chromosome
Accession NZ_LS483344
Organism Streptococcus pyogenes strain NCTC12840

Toxin (Protein)


Gene name parE Uniprot ID A0A4Z2JY48
Locus tag DQL16_RS08315 Protein ID WP_002982731.1
Coordinates 1596842..1597177 (+) Length 112 a.a.

Antitoxin (Protein)


Gene name parD Uniprot ID A0A5S4TJ53
Locus tag DQL16_RS08310 Protein ID WP_011055007.1
Coordinates 1596565..1596852 (+) Length 96 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
DQL16_RS08285 1591756..1592739 - 984 WP_111677487.1 tagatose-bisphosphate aldolase -
DQL16_RS08290 1592743..1593672 - 930 WP_011055004.1 tagatose-6-phosphate kinase -
DQL16_RS08295 1593718..1594233 - 516 WP_011055005.1 galactose-6-phosphate isomerase subunit LacB -
DQL16_RS08300 1594268..1594696 - 429 WP_002982747.1 galactose-6-phosphate isomerase subunit LacA -
DQL16_RS08305 1595142..1595915 + 774 WP_011055006.1 DeoR/GlpR family DNA-binding transcription regulator -
DQL16_RS08310 1596565..1596852 + 288 WP_011055007.1 hypothetical protein Antitoxin
DQL16_RS08315 1596842..1597177 + 336 WP_002982731.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
DQL16_RS09635 1597244..1598315 + 1072 Protein_1524 site-specific integrase -
DQL16_RS08340 1598447..1598839 - 393 WP_002982716.1 30S ribosomal protein S9 -
DQL16_RS08345 1598860..1599306 - 447 WP_002982710.1 50S ribosomal protein L13 -
DQL16_RS08350 1599524..1599730 - 207 WP_002982695.1 helix-turn-helix transcriptional regulator -
DQL16_RS08355 1599727..1600425 - 699 WP_011055008.1 hypothetical protein -
DQL16_RS08360 1600552..1601412 - 861 WP_111677489.1 DegV family protein -
DQL16_RS08365 1601509..1602027 - 519 WP_011055010.1 NYN domain-containing protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(8-105)

Antitoxin


No domain identified.



Sequences

Toxin        


Download         Length: 112 a.a.        Molecular weight: 13145.88 Da        Isoelectric Point: 5.2144

>T292388 WP_002982731.1 NZ_LS483344:1596842-1597177 [Streptococcus pyogenes]
MDYKKYQIIYAPDVLEKLKEIRDYISQNYSSTSGQRKMEQIISDIEKLEVFPEVGFDADEKYGSKISHYHSTKGYTLSKD
YIVLYHIEGEENRVVIDYLLPTQSDYIKLFK

Download         Length: 336 bp

Antitoxin


Download         Length: 96 a.a.        Molecular weight: 10964.59 Da        Isoelectric Point: 5.2318

>AT292388 WP_011055007.1 NZ_LS483344:1596565-1596852 [Streptococcus pyogenes]
MTTVKKNRTVTFQANKELVSEAMTVLNKKNLTLSSALRLFLQNVVVTNEVDLLTEEELEKEKLFKQFQAEINKNIEDVRQ
GKFYTSEEVRAELGL

Download         Length: 288 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB A0A4Z2JY48

Antitoxin

Source ID Structure
AlphaFold DB A0A5S4TJ53

References