Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1947111..1947379 | Replicon | chromosome |
| Accession | NZ_LS483303 | ||
| Organism | Escherichia coli strain NCTC9967 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1947238..1947341 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1947111..1947379 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DQM88_RS09955 | 1943664..1944326 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| DQM88_RS09960 | 1944350..1945006 | - | 657 | WP_094318722.1 | carbon-nitrogen hydrolase family protein | - |
| DQM88_RS09965 | 1945108..1945338 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| DQM88_RS09970 | 1945477..1945851 | + | 375 | WP_000168739.1 | CopC domain-containing protein YobA | - |
| DQM88_RS09975 | 1945855..1946727 | + | 873 | WP_000879277.1 | copper homeostasis membrane protein CopD | - |
| DQM88_RS09980 | 1946740..1947081 | + | 342 | WP_001515445.1 | YebY family protein | - |
| - | 1947111..1947379 | - | 269 | - | - | Antitoxin |
| - | 1947238..1947341 | + | 104 | - | - | Toxin |
| DQM88_RS09985 | 1947476..1948132 | + | 657 | WP_001515444.1 | protein-serine/threonine phosphatase | - |
| DQM88_RS09990 | 1948133..1948324 | - | 192 | WP_001296140.1 | YebW family protein | - |
| DQM88_RS09995 | 1948429..1948665 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| DQM88_RS10000 | 1948783..1950222 | - | 1440 | WP_024189843.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T292228 NZ_LS483303:1947238-1947341 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT292228 NZ_LS483303:c1947379-1947111 [Escherichia coli]
AAAGTCAGCGAAGGGAATGTTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATGTTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
