Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) itaRT/DUF1778(antitoxin)
Location 3486673..3487510 Replicon chromosome
Accession NZ_LS483297
Organism Escherichia coli strain NCTC11023

Toxin (Protein)


Gene name itaT Uniprot ID Q3Z4X7
Locus tag DQM98_RS18080 Protein ID WP_000227784.1
Coordinates 3486968..3487510 (+) Length 181 a.a.

Antitoxin (Protein)


Gene name itaR Uniprot ID I2UQS9
Locus tag DQM98_RS18075 Protein ID WP_001297137.1
Coordinates 3486673..3486984 (+) Length 104 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
DQM98_RS18050 3481693..3482640 + 948 WP_001239436.1 cytochrome o ubiquinol oxidase subunit II -
DQM98_RS18055 3482662..3484653 + 1992 WP_000467180.1 cytochrome o ubiquinol oxidase subunit I -
DQM98_RS18060 3484643..3485257 + 615 WP_000179819.1 cytochrome o ubiquinol oxidase subunit III -
DQM98_RS18065 3485257..3485586 + 330 WP_000019869.1 cytochrome o ubiquinol oxidase subunit IV -
DQM98_RS18070 3485598..3486488 + 891 WP_000971336.1 heme o synthase -
DQM98_RS18075 3486673..3486984 + 312 WP_001297137.1 DUF1778 domain-containing protein Antitoxin
DQM98_RS18080 3486968..3487510 + 543 WP_000227784.1 GNAT family N-acetyltransferase Toxin
DQM98_RS18085 3487566..3488501 - 936 WP_001297127.1 sel1 repeat family protein -
DQM98_RS18090 3488909..3490273 + 1365 WP_001000978.1 MFS transporter -
DQM98_RS18095 3490401..3490892 - 492 WP_001138904.1 nucleotide binding protein YajQ -
DQM98_RS18100 3491060..3491971 + 912 WP_000705853.1 2-dehydropantoate 2-reductase -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

GNAT domain

(68-156)

Antitoxin

Vibrio phage ICP1, Orf50

(14-97)


Sequences

Toxin        


Download         Length: 181 a.a.        Molecular weight: 19805.02 Da        Isoelectric Point: 8.3395

>T292184 WP_000227784.1 NZ_LS483297:3486968-3487510 [Escherichia coli]
MVDKHEEITLPIVLSCNYQSDITYPGQKQFDCGNPVIDKFVRASLKKSVRNSDCAAKALIDRQSGELIGICTFTAYSLEK
QRVSGVLQGSQPSEIGVVRLVMLGVARKYQKRGFGQDLLCDFFEHVKIIHQALPIKGVYLDADPAAINFYARLGFVQLSA
TPNAFGAVPMFLAIQHILAA

Download         Length: 543 bp

Antitoxin


Download         Length: 104 a.a.        Molecular weight: 11358.04 Da        Isoelectric Point: 10.4825

>AT292184 WP_001297137.1 NZ_LS483297:3486673-3486984 [Escherichia coli]
MPGKTATLPDVDKTLKNARVELKTSPDAKNKLREAAQAVGVDLSAFILSAAMERAESVLDNQRRRELSNQSWELMNQLIA
EPAQPTLALKALMKRKNSDGRQA

Download         Length: 312 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
PDB 7BYY

Antitoxin

Source ID Structure
AlphaFold DB A0A0E0Y6B3

References