Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2020327..2020598 | Replicon | chromosome |
| Accession | NZ_LS483297 | ||
| Organism | Escherichia coli strain NCTC11023 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2020457..2020560 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2020327..2020598 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DQM98_RS10365 | 2016882..2017544 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| DQM98_RS10370 | 2017568..2018224 | - | 657 | WP_000011657.1 | carbon-nitrogen hydrolase family protein | - |
| DQM98_RS10375 | 2018326..2018556 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| DQM98_RS10380 | 2018695..2019069 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| DQM98_RS10385 | 2019073..2019945 | + | 873 | WP_109866052.1 | copper homeostasis membrane protein CopD | - |
| DQM98_RS10390 | 2019958..2020299 | + | 342 | WP_000976476.1 | YebY family protein | - |
| - | 2020327..2020598 | - | 272 | - | - | Antitoxin |
| - | 2020457..2020560 | + | 104 | - | - | Toxin |
| DQM98_RS10395 | 2020695..2021351 | + | 657 | WP_000812720.1 | protein-serine/threonine phosphatase | - |
| DQM98_RS10400 | 2021352..2021543 | - | 192 | WP_001296140.1 | YebW family protein | - |
| DQM98_RS10405 | 2021648..2021884 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| DQM98_RS10410 | 2022002..2023441 | - | 1440 | WP_024176540.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T292177 NZ_LS483297:2020457-2020560 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT292177 NZ_LS483297:c2020598-2020327 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
