Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2018985..2019256 | Replicon | chromosome |
| Accession | NZ_LS483296 | ||
| Organism | Escherichia coli strain NCTC9966 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2019115..2019218 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2018985..2019256 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DQM96_RS10410 | 2015540..2016202 | - | 663 | WP_000944258.1 | exodeoxyribonuclease X | - |
| DQM96_RS10415 | 2016226..2016882 | - | 657 | WP_073544597.1 | carbon-nitrogen hydrolase family protein | - |
| DQM96_RS10420 | 2016984..2017214 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| DQM96_RS10425 | 2017353..2017727 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| DQM96_RS10430 | 2017731..2018603 | + | 873 | WP_000879295.1 | copper homeostasis membrane protein CopD | - |
| DQM96_RS10435 | 2018616..2018957 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 2018985..2019256 | - | 272 | - | - | Antitoxin |
| - | 2019115..2019218 | + | 104 | - | - | Toxin |
| DQM96_RS10440 | 2019353..2020009 | + | 657 | WP_000812732.1 | protein-serine/threonine phosphatase | - |
| DQM96_RS10445 | 2020010..2020201 | - | 192 | WP_001338167.1 | YebW family protein | - |
| DQM96_RS10450 | 2020306..2020542 | - | 237 | WP_001338166.1 | DUF1480 family protein | - |
| DQM96_RS10455 | 2020660..2022141 | - | 1482 | WP_197709030.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T292162 NZ_LS483296:2019115-2019218 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT292162 NZ_LS483296:c2019256-2018985 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
