Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2873684..2873798 | Replicon | chromosome |
| Accession | NZ_LR994655 | ||
| Organism | Serratia sp. Tan611 isolate Serratia sp. Tan611 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2873685..2873781 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2873684..2873798 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| TAN611_RS13575 | 2869150..2870235 | + | 1086 | WP_203066571.1 | DUF1864 family protein | - |
| TAN611_RS13580 | 2870279..2871982 | + | 1704 | WP_203066572.1 | tryptophan 7-halogenase | - |
| TAN611_RS13585 | 2872007..2873098 | + | 1092 | WP_203066573.1 | Rieske 2Fe-2S domain-containing protein | - |
| TAN611_RS13590 | 2873274..2873585 | + | 312 | WP_203066574.1 | DUF1493 family protein | - |
| - | 2873684..2873798 | + | 115 | - | - | Antitoxin |
| - | 2873685..2873781 | - | 97 | - | - | Toxin |
| TAN611_RS13595 | 2873923..2874264 | - | 342 | WP_111736936.1 | YebY family protein | - |
| TAN611_RS13600 | 2874333..2875214 | - | 882 | WP_111736935.1 | copper homeostasis membrane protein CopD | - |
| TAN611_RS13605 | 2875218..2875601 | - | 384 | WP_203066575.1 | CopC domain-containing protein YobA | - |
| TAN611_RS13610 | 2876026..2876547 | - | 522 | WP_105231474.1 | non-heme ferritin | - |
| TAN611_RS13615 | 2876935..2877165 | + | 231 | WP_105231475.1 | DNA polymerase III subunit theta | - |
| TAN611_RS13620 | 2877205..2878164 | - | 960 | WP_111736933.1 | prolyl aminopeptidase | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 97 bp
>T292101 NZ_LR994655:c2873781-2873685 [Serratia sp. Tan611]
AACAAGCCCTGCAATAAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATAGGAATC
GTATTCGGTCTTTTTTT
AACAAGCCCTGCAATAAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATAGGAATC
GTATTCGGTCTTTTTTT
Antitoxin
Download Length: 115 bp
>AT292101 NZ_LR994655:2873684-2873798 [Serratia sp. Tan611]
TAAAAAAAGACCGAATACGATTCCTATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCA
TTTATTGCAGGGCTTGTTCAGCCATGCACTTTAAG
TAAAAAAAGACCGAATACGATTCCTATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCA
TTTATTGCAGGGCTTGTTCAGCCATGCACTTTAAG
