Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) vapBC/VapC-StbC
Location 4817926..4818593 Replicon chromosome
Accession NZ_LR994544
Organism Xanthomonas euroxanthea isolate X. euroxanthea CPBF 424

Toxin (Protein)


Gene name vapC Uniprot ID -
Locus tag XTG_RS20260 Protein ID WP_104627459.1
Coordinates 4818177..4818593 (+) Length 139 a.a.

Antitoxin (Protein)


Gene name vapB Uniprot ID -
Locus tag XTG_RS20255 Protein ID WP_102582218.1
Coordinates 4817926..4818180 (+) Length 85 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
XTG_RS20230 4813380..4814219 + 840 WP_115678178.1 SDR family oxidoreductase -
XTG_RS20235 4814370..4815635 + 1266 WP_164739333.1 cardiolipin synthase B -
XTG_RS20240 4815678..4816214 - 537 WP_115678179.1 hypothetical protein -
XTG_RS20245 4816483..4816689 + 207 WP_104586339.1 hypothetical protein -
XTG_RS20250 4816676..4817788 + 1113 WP_115678180.1 type II toxin-antitoxin system RelE/ParE family toxin -
XTG_RS20255 4817926..4818180 + 255 WP_102582218.1 Arc family DNA-binding protein Antitoxin
XTG_RS20260 4818177..4818593 + 417 WP_104627459.1 type II toxin-antitoxin system VapC family toxin Toxin
XTG_RS20265 4818719..4819279 - 561 WP_115678181.1 hypothetical protein -
XTG_RS20270 4820049..4820342 + 294 WP_104586333.1 hypothetical protein -
XTG_RS20275 4820329..4820781 - 453 WP_181901322.1 hypothetical protein -
XTG_RS20280 4821124..4821291 + 168 WP_164739645.1 hypothetical protein -
XTG_RS20285 4821767..4823392 + 1626 WP_115678182.1 enterochelin esterase -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

PIN domain

(2-127)

Antitoxin

Arc-like DNA binding domain

(1-41)


Sequences

Toxin        


Download         Length: 139 a.a.        Molecular weight: 14770.04 Da        Isoelectric Point: 5.6845

>T292099 WP_104627459.1 NZ_LR994544:4818177-4818593 [Xanthomonas euroxanthea]
VILLDTNVISELWRPQPNPKVVAWIDAQAVETLFLSVVTVAELRYGIAVMPEGRKRSTLHARLESDVLPLFNGRLLAFDL
DASHAFATLASKARAAGLTLGRADAYIAATAAAQGLTVATRDTAPFAAMALDVIDPWS

Download         Length: 417 bp

Antitoxin


Download         Length: 85 a.a.        Molecular weight: 9103.51 Da        Isoelectric Point: 10.7542

>AT292099 WP_102582218.1 NZ_LR994544:4817926-4818180 [Xanthomonas euroxanthea]
MPSFTVRNIPDEVHRAIRARAALHGRSTEAEIRAILESAAKPADRVKLGSLLVDIGRDAGLTAKQADAFDTLRDKTAIKP
ISLK

Download         Length: 255 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References