Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) shpAB/BrnT-BrnA
Location 3890011..3890587 Replicon chromosome
Accession NZ_LR898868
Organism Escherichia coli isolate MSB1_1D-sc-2280324

Toxin (Protein)


Gene name shpA Uniprot ID D3GXZ2
Locus tag JMX26_RS18810 Protein ID WP_001297643.1
Coordinates 3890300..3890587 (-) Length 96 a.a.

Antitoxin (Protein)


Gene name shpB Uniprot ID A0A829G8Z0
Locus tag JMX26_RS18805 Protein ID WP_000063156.1
Coordinates 3890011..3890313 (-) Length 101 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
JMX26_RS18790 3886607..3888757 + 2151 WP_001295524.1 pyruvate/proton symporter BtsT -
JMX26_RS18795 3888807..3889010 + 204 WP_000467859.1 YbdD/YjiX family protein -
JMX26_RS18800 3889021..3889977 + 957 WP_001297640.1 GTPase -
JMX26_RS18805 3890011..3890313 - 303 WP_000063156.1 BrnA antitoxin family protein Antitoxin
JMX26_RS18810 3890300..3890587 - 288 WP_001297643.1 BrnT family toxin Toxin
JMX26_RS18815 3890786..3891483 - 698 Protein_3675 IS1 family transposase -
JMX26_RS18820 3891540..3891635 + 96 Protein_3676 dienelactone hydrolase family protein -
JMX26_RS18825 3891781..3893013 + 1233 WP_063117540.1 multidrug efflux MFS transporter MdtM -
JMX26_RS18830 3893054..3894334 + 1281 WP_001037380.1 DUF445 domain-containing protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Ribonuclease toxin, BrnT, of type II toxin-antitoxin system

(7-88)

Antitoxin

BrnA antitoxin of type II toxin-antitoxin system

(37-93)


Sequences

Toxin        


Download         Length: 96 a.a.        Molecular weight: 11295.77 Da        Isoelectric Point: 6.8821

>T292046 WP_001297643.1 NZ_LR898868:c3890587-3890300 [Escherichia coli]
MPMEFEWDENKAKSNRVKHGIRFEDAVLLFDDPQHLSQQERIENGEYRWQTIGLVYGIVVILVAHTIRFESGNEIIRIIS
ARKADRKERNRYEHG

Download         Length: 288 bp

Antitoxin


Download         Length: 101 a.a.        Molecular weight: 11521.99 Da        Isoelectric Point: 9.4646

>AT292046 WP_000063156.1 NZ_LR898868:c3890313-3890011 [Escherichia coli]
MSMVKHKRGTSSTLDVQHEAELKALANKSDEDIDYSDIPPSSDEQWSNAERGKFYRPLKTQASVRIDADVMEWLKRPGKG
YQTRLNAILREAMLRDQNKK

Download         Length: 303 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB A0A829GEV9

Antitoxin

Source ID Structure
AlphaFold DB A0A829G8Z0

References