Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1886187..1886332 | Replicon | chromosome |
| Accession | NZ_LR890722 | ||
| Organism | Klebsiella pneumoniae isolate KSB1_1H | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1886223..1886325 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1886187..1886332 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JMW72_RS09120 | 1881317..1883377 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| JMW72_RS09125 | 1883381..1884040 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| JMW72_RS09130 | 1884119..1884349 | - | 231 | WP_040147502.1 | DNA polymerase III subunit theta | - |
| JMW72_RS09135 | 1884462..1884836 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| JMW72_RS09140 | 1884840..1885709 | + | 870 | WP_004175431.1 | copper homeostasis membrane protein CopD | - |
| JMW72_RS09145 | 1885726..1886064 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 1886187..1886332 | - | 146 | - | - | Antitoxin |
| - | 1886223..1886325 | + | 103 | - | - | Toxin |
| JMW72_RS09150 | 1886700..1886843 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| JMW72_RS09155 | 1886948..1887916 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| JMW72_RS09160 | 1888073..1888726 | + | 654 | WP_032415192.1 | protein-serine/threonine phosphatase | - |
| JMW72_RS09165 | 1888723..1888914 | - | 192 | WP_002911395.1 | YebW family protein | - |
| JMW72_RS09170 | 1889012..1889251 | - | 240 | WP_002911393.1 | YebV family protein | - |
| JMW72_RS09175 | 1889367..1890800 | - | 1434 | WP_032415191.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T291965 NZ_LR890722:1886223-1886325 [Klebsiella pneumoniae]
GCAAGGCGGCTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGGCTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT291965 NZ_LR890722:c1886332-1886187 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGCCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGCCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
