Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2315530..2315801 | Replicon | chromosome |
| Accession | NZ_LR890714 | ||
| Organism | Escherichia coli isolate MSB1_6C-sc-2280315 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2315660..2315763 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2315530..2315801 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JMW19_RS10950 | 2312085..2312747 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| JMW19_RS10955 | 2312771..2313427 | - | 657 | WP_000011653.1 | carbon-nitrogen hydrolase family protein | - |
| JMW19_RS10960 | 2313529..2313759 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| JMW19_RS10965 | 2313898..2314272 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| JMW19_RS10970 | 2314276..2315148 | + | 873 | WP_001551232.1 | copper homeostasis membrane protein CopD | - |
| JMW19_RS10975 | 2315161..2315502 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 2315530..2315801 | - | 272 | - | - | Antitoxin |
| - | 2315660..2315763 | + | 104 | - | - | Toxin |
| JMW19_RS10980 | 2315898..2316554 | + | 657 | WP_001551231.1 | protein-serine/threonine phosphatase | - |
| JMW19_RS10985 | 2316555..2316746 | - | 192 | WP_001296140.1 | YebW family protein | - |
| JMW19_RS10990 | 2316851..2317087 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| JMW19_RS10995 | 2317205..2318644 | - | 1440 | WP_024186439.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T291928 NZ_LR890714:2315660-2315763 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT291928 NZ_LR890714:c2315801-2315530 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGCCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGCCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
