Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1888470..1888615 | Replicon | chromosome |
| Accession | NZ_LR890710 | ||
| Organism | Klebsiella pneumoniae isolate KSB2_9B | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1888506..1888608 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1888470..1888615 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JMX55_RS09190 | 1883600..1885660 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| JMX55_RS09195 | 1885664..1886323 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| JMX55_RS09200 | 1886402..1886632 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| JMX55_RS09205 | 1886745..1887119 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| JMX55_RS09210 | 1887123..1887992 | + | 870 | WP_004189267.1 | copper homeostasis membrane protein CopD | - |
| JMX55_RS09215 | 1888009..1888347 | + | 339 | WP_016529031.1 | YebY family protein | - |
| - | 1888470..1888615 | - | 146 | - | - | Antitoxin |
| - | 1888506..1888608 | + | 103 | - | - | Toxin |
| JMX55_RS09220 | 1888984..1889127 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| JMX55_RS09225 | 1889232..1890200 | - | 969 | WP_074185275.1 | DUF535 family protein | - |
| JMX55_RS09230 | 1890357..1891010 | + | 654 | WP_032447686.1 | protein-serine/threonine phosphatase | - |
| JMX55_RS09235 | 1891007..1891198 | - | 192 | WP_002911395.1 | YebW family protein | - |
| JMX55_RS09240 | 1891296..1891535 | - | 240 | WP_002911393.1 | YebV family protein | - |
| JMX55_RS09245 | 1891651..1893084 | - | 1434 | WP_032447684.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T291909 NZ_LR890710:1888506-1888608 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT291909 NZ_LR890710:c1888615-1888470 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
