Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1537918..1538063 | Replicon | chromosome |
| Accession | NZ_LR890702 | ||
| Organism | Klebsiella pneumoniae isolate INF305-sc-2280094 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1537925..1538027 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1537918..1538063 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JMX64_RS07705 | 1533449..1534882 | + | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| JMX64_RS07710 | 1534998..1535237 | + | 240 | WP_002911393.1 | YebV family protein | - |
| JMX64_RS07715 | 1535335..1535526 | + | 192 | WP_002911395.1 | YebW family protein | - |
| JMX64_RS07720 | 1535523..1536176 | - | 654 | WP_004180432.1 | protein-serine/threonine phosphatase | - |
| JMX64_RS07725 | 1536333..1537301 | + | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| JMX64_RS07730 | 1537406..1537549 | + | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| - | 1537918..1538063 | + | 146 | - | - | Antitoxin |
| - | 1537925..1538027 | - | 103 | - | - | Toxin |
| JMX64_RS07735 | 1538186..1538524 | - | 339 | WP_002911404.1 | YebY family protein | - |
| JMX64_RS07740 | 1538541..1539410 | - | 870 | WP_004175431.1 | copper homeostasis membrane protein CopD | - |
| JMX64_RS07745 | 1539414..1539788 | - | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| JMX64_RS07750 | 1539901..1540131 | + | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| JMX64_RS07755 | 1540210..1540869 | + | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| JMX64_RS07760 | 1540873..1542933 | - | 2061 | WP_004151449.1 | oligopeptidase B | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T291887 NZ_LR890702:c1538027-1537925 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT291887 NZ_LR890702:1537918-1538063 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
