Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) vapBC/LOTUS_5_Limkain_b1(toxin)
Location 5103192..5103817 Replicon chromosome
Accession NZ_LR890691
Organism Klebsiella pneumoniae isolate INF119-sc-2279930

Toxin (Protein)


Gene name vapC Uniprot ID R4Y4A3
Locus tag JMW99_RS24705 Protein ID WP_002882817.1
Coordinates 5103192..5103575 (-) Length 128 a.a.

Antitoxin (Protein)


Gene name vapB Uniprot ID J2DFR0
Locus tag JMW99_RS24710 Protein ID WP_004150355.1
Coordinates 5103575..5103817 (-) Length 81 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
JMW99_RS24690 5100558..5101460 + 903 WP_002882822.1 formate dehydrogenase subunit beta -
JMW99_RS24695 5101457..5102092 + 636 WP_002882818.1 formate dehydrogenase cytochrome b556 subunit -
JMW99_RS24700 5102089..5103018 + 930 WP_004150358.1 formate dehydrogenase accessory protein FdhE -
JMW99_RS24705 5103192..5103575 - 384 WP_002882817.1 type II toxin-antitoxin system VapC family toxin Toxin
JMW99_RS24710 5103575..5103817 - 243 WP_004150355.1 ribbon-helix-helix domain-containing protein Antitoxin
JMW99_RS24715 5104022..5104939 + 918 WP_023302328.1 alpha/beta hydrolase -
JMW99_RS24720 5104953..5105894 - 942 WP_004178031.1 fatty acid biosynthesis protein FabY -
JMW99_RS24725 5105939..5106376 - 438 WP_002882809.1 D-tyrosyl-tRNA(Tyr) deacylase -
JMW99_RS24730 5106373..5107233 - 861 WP_004146232.1 virulence factor BrkB family protein -
JMW99_RS24735 5107227..5107826 - 600 WP_004151865.1 glucose-1-phosphatase -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

PIN domain

(7-112)

Antitoxin

Predicted DNA-binding protein, ribbon-helix-helix domain

(16-47)


Sequences

Toxin        


Download         Length: 128 a.a.        Molecular weight: 14377.62 Da        Isoelectric Point: 7.3178

>T291846 WP_002882817.1 NZ_LR890691:c5103575-5103192 [Klebsiella pneumoniae]
MTSGSALFDTNILIDLFSGRREAKQALEAWPPQNAISLITWMEVMVGAKKYHQEQRTRMALSTFNIINISQDIAERSVAL
RQEYKLKLPDAIILATAQLHRLELITRNTKDFAGIPGVVTPYEIHPE

Download         Length: 384 bp

Antitoxin


Download         Length: 81 a.a.        Molecular weight: 9567.83 Da        Isoelectric Point: 4.3509

>AT291846 WP_004150355.1 NZ_LR890691:c5103817-5103575 [Klebsiella pneumoniae]
MMAERDMGRILLDLSDDVIQRLDDLKVQRNIPRAELLREAVEQYLEKQDRAKDTISSALGLWQDCEEDGMEYQRQLRKEW

Download         Length: 243 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB A0A0H3GPK8

Antitoxin

Source ID Structure
AlphaFold DB A0A0H3GGU9

References