Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1832559..1832704 | Replicon | chromosome |
| Accession | NZ_LR890669 | ||
| Organism | Klebsiella pneumoniae isolate INF321-sc-2280120 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1832595..1832697 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1832559..1832704 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JMW44_RS08935 | 1827689..1829749 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| JMW44_RS08940 | 1829753..1830412 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| JMW44_RS08945 | 1830491..1830721 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| JMW44_RS08950 | 1830834..1831208 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| JMW44_RS08955 | 1831212..1832081 | + | 870 | WP_004189267.1 | copper homeostasis membrane protein CopD | - |
| JMW44_RS08960 | 1832098..1832436 | + | 339 | WP_016529031.1 | YebY family protein | - |
| - | 1832559..1832704 | - | 146 | - | - | Antitoxin |
| - | 1832595..1832697 | + | 103 | - | - | Toxin |
| JMW44_RS08965 | 1833071..1833214 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| JMW44_RS08970 | 1833319..1834287 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| JMW44_RS08975 | 1834444..1835097 | + | 654 | WP_064179133.1 | protein-serine/threonine phosphatase | - |
| JMW44_RS08980 | 1835094..1835285 | - | 192 | WP_002911395.1 | YebW family protein | - |
| JMW44_RS08985 | 1835383..1835622 | - | 240 | WP_002911393.1 | YebV family protein | - |
| JMW44_RS08990 | 1835738..1837171 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T291783 NZ_LR890669:1832595-1832697 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT291783 NZ_LR890669:c1832704-1832559 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
