291703

Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) vapBC/LOTUS_5_Limkain_b1(toxin)
Location 5266596..5267221 Replicon chromosome
Accession NZ_LR890648
Organism Klebsiella pneumoniae isolate INF266-sc-2280182

Toxin (Protein)


Gene name vapC Uniprot ID R4Y4A3
Locus tag JMW87_RS25625 Protein ID WP_002882817.1
Coordinates 5266596..5266979 (-) Length 128 a.a.

Antitoxin (Protein)


Gene name vapB Uniprot ID J2DFR0
Locus tag JMW87_RS25630 Protein ID WP_004150355.1
Coordinates 5266979..5267221 (-) Length 81 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
JMW87_RS25610 5263962..5264864 + 903 WP_002882822.1 formate dehydrogenase subunit beta -
JMW87_RS25615 5264861..5265496 + 636 WP_002882818.1 formate dehydrogenase cytochrome b556 subunit -
JMW87_RS25620 5265493..5266422 + 930 WP_004150358.1 formate dehydrogenase accessory protein FdhE -
JMW87_RS25625 5266596..5266979 - 384 WP_002882817.1 type II toxin-antitoxin system VapC family toxin Toxin
JMW87_RS25630 5266979..5267221 - 243 WP_004150355.1 ribbon-helix-helix domain-containing protein Antitoxin
JMW87_RS25635 5267426..5268343 + 918 WP_023302328.1 alpha/beta hydrolase -
JMW87_RS25640 5268357..5269298 - 942 WP_004178031.1 fatty acid biosynthesis protein FabY -
JMW87_RS25645 5269343..5269780 - 438 WP_002882809.1 D-tyrosyl-tRNA(Tyr) deacylase -
JMW87_RS25650 5269777..5270637 - 861 WP_004146232.1 virulence factor BrkB family protein -
JMW87_RS25655 5270631..5271230 - 600 WP_004151865.1 glucose-1-phosphatase -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

PIN domain

(7-112)

Antitoxin

Predicted DNA-binding protein, ribbon-helix-helix domain

(16-47)


Sequences

Toxin        


Download         Length: 128 a.a.        Molecular weight: 14377.62 Da        Isoelectric Point: 7.3178

>T291703 WP_002882817.1 NZ_LR890648:c5266979-5266596 [Klebsiella pneumoniae]
MTSGSALFDTNILIDLFSGRREAKQALEAWPPQNAISLITWMEVMVGAKKYHQEQRTRMALSTFNIINISQDIAERSVAL
RQEYKLKLPDAIILATAQLHRLELITRNTKDFAGIPGVVTPYEIHPE

Download         Length: 384 bp

Antitoxin


Download         Length: 81 a.a.        Molecular weight: 9567.83 Da        Isoelectric Point: 4.3509

>AT291703 WP_004150355.1 NZ_LR890648:c5267221-5266979 [Klebsiella pneumoniae]
MMAERDMGRILLDLSDDVIQRLDDLKVQRNIPRAELLREAVEQYLEKQDRAKDTISSALGLWQDCEEDGMEYQRQLRKEW

Download         Length: 243 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB A0A0H3GPK8

Antitoxin

Source ID Structure
AlphaFold DB A0A0H3GGU9

References