Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) hipBA/HipA-HipB
Location 2589186..2590774 Replicon chromosome
Accession NZ_LR890648
Organism Klebsiella pneumoniae isolate INF266-sc-2280182

Toxin (Protein)


Gene name hipA Uniprot ID A0A485W5A2
Locus tag JMW87_RS12575 Protein ID WP_023342812.1
Coordinates 2589186..2590508 (-) Length 441 a.a.

Antitoxin (Protein)


Gene name hipB Uniprot ID -
Locus tag JMW87_RS12580 Protein ID WP_024622638.1
Coordinates 2590508..2590774 (-) Length 89 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
JMW87_RS12560 2584242..2586743 + 2502 WP_023342811.1 fimbrial biogenesis outer membrane usher protein -
JMW87_RS12565 2586731..2587735 + 1005 WP_004224758.1 type 1 fimbrial protein -
JMW87_RS12570 2587877..2589169 + 1293 WP_002904794.1 glycoside hydrolase family 10 protein -
JMW87_RS12575 2589186..2590508 - 1323 WP_023342812.1 type II toxin-antitoxin system HipA family toxin Toxin
JMW87_RS12580 2590508..2590774 - 267 WP_024622638.1 type II toxin-antitoxin system antitoxin HipB Antitoxin
JMW87_RS12585 2591039..2591365 - 327 WP_004184023.1 hydroxyisourate hydrolase -
JMW87_RS12590 2591362..2591862 - 501 WP_002904787.1 2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase -
JMW87_RS12595 2591840..2593219 - 1380 WP_004184021.1 purine permease -
JMW87_RS12600 2593565..2594719 + 1155 WP_002904783.1 FAD-dependent urate hydroxylase HpxO -
JMW87_RS12605 2594700..2595623 - 924 WP_002904781.1 LysR family hpxDE operon transcriptional regulator HpxR -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)
- inside Integrative and Conjugative Element - mgtC / iroE 2391575..2624432 232857


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

HipA, N-terminal subdomain 1

(4-103)

Antitoxin

Cro/C1-type helix-turn-helix domain

(17-65)


Sequences

Toxin        


Download         Length: 441 a.a.        Molecular weight: 49171.46 Da        Isoelectric Point: 7.5358

>T291697 WP_023342812.1 NZ_LR890648:c2590508-2589186 [Klebsiella pneumoniae]
MATLTTWMNNVRVGTLTRQANGAHSFRYEEEWLRSPRARPLSLSLPLQYGNITADAVYHYFDNLLPDSPQVRDRIVRRYQ
ARSKQPFDLLAEVGRDSVGAVTLLPPGEEAHLEGLRWQTLDEAQLTALLTAYQSDIPLGMITSQDDFRISVAGAQEKTAL
LRMGEQWCIPQGATPTTHIIKLPIGEIKQPNATLDLRESVDNEYLCLALARELGLAVPEAEIITTPRIRALAVTRFDRRW
AQEGRVLLRLPQEDLCQAFGLPSAMKYESDGGPGIAAIMTFLLGSSEALKDRYDFMKFMVFQWLTGATDGHAKNFSIYLL
PGGSYRLTPFYDIISAFPVLGGTGLHLRDLKLSMGLNATKGRKTEVNAIYPRHFLATAKAVNFPREQMLAILQEFAGHVP
QAIESARRTLPADFSSHVWQAITENMLKLHARLQQGLQAL

Download         Length: 1323 bp

Antitoxin


Download         Length: 89 a.a.        Molecular weight: 9924.30 Da        Isoelectric Point: 8.5912

>AT291697 WP_024622638.1 NZ_LR890648:c2590774-2590508 [Klebsiella pneumoniae]
MNSPQIYSPVQLANYMKLLRQQNHWTQDALARRIGIKQATLSNFENHPDKTTLTTLFKILQSLGVVMTLNAKAAETAPAP
DNNTDLDW

Download         Length: 267 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB A0A485W5A2

Antitoxin

Source ID Structure

References