Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1874447..1874592 | Replicon | chromosome |
| Accession | NZ_LR890648 | ||
| Organism | Klebsiella pneumoniae isolate INF266-sc-2280182 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1874483..1874585 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1874447..1874592 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JMW87_RS08985 | 1869577..1871637 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| JMW87_RS08990 | 1871641..1872300 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| JMW87_RS08995 | 1872379..1872609 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| JMW87_RS09000 | 1872722..1873096 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| JMW87_RS09005 | 1873100..1873969 | + | 870 | WP_009307538.1 | copper homeostasis membrane protein CopD | - |
| JMW87_RS09010 | 1873986..1874324 | + | 339 | WP_009307539.1 | YebY family protein | - |
| - | 1874447..1874592 | - | 146 | - | - | Antitoxin |
| - | 1874483..1874585 | + | 103 | - | - | Toxin |
| JMW87_RS09015 | 1874961..1875104 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| JMW87_RS09020 | 1875212..1876177 | - | 966 | Protein_1758 | DUF535 domain-containing protein | - |
| JMW87_RS09025 | 1876334..1876987 | + | 654 | WP_009307541.1 | protein-serine/threonine phosphatase | - |
| JMW87_RS09030 | 1876984..1877175 | - | 192 | WP_002911395.1 | YebW family protein | - |
| JMW87_RS09035 | 1877273..1877512 | - | 240 | WP_002911393.1 | YebV family protein | - |
| JMW87_RS09040 | 1877628..1879061 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T291693 NZ_LR890648:1874483-1874585 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT291693 NZ_LR890648:c1874592-1874447 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
