Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1863567..1863712 | Replicon | chromosome |
| Accession | NZ_LR890569 | ||
| Organism | Klebsiella pneumoniae isolate INF144-sc-2279979 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1863603..1863705 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1863567..1863712 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JMW96_RS09060 | 1858697..1860757 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| JMW96_RS09065 | 1860761..1861420 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| JMW96_RS09070 | 1861499..1861729 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| JMW96_RS09075 | 1861842..1862216 | + | 375 | WP_023286640.1 | CopC domain-containing protein YobA | - |
| JMW96_RS09080 | 1862220..1863089 | + | 870 | WP_023286639.1 | copper homeostasis membrane protein CopD | - |
| JMW96_RS09085 | 1863106..1863444 | + | 339 | WP_016529031.1 | YebY family protein | - |
| - | 1863567..1863712 | - | 146 | - | - | Antitoxin |
| - | 1863603..1863705 | + | 103 | - | - | Toxin |
| JMW96_RS09090 | 1864079..1864222 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| JMW96_RS09095 | 1864327..1865295 | - | 969 | WP_074194451.1 | VirK/YbjX family protein | - |
| JMW96_RS09100 | 1865452..1866105 | + | 654 | WP_023280291.1 | protein-serine/threonine phosphatase | - |
| JMW96_RS09105 | 1866102..1866293 | - | 192 | WP_002911395.1 | YebW family protein | - |
| JMW96_RS09110 | 1866391..1866630 | - | 240 | WP_002911393.1 | YebV family protein | - |
| JMW96_RS09115 | 1866746..1868179 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T291437 NZ_LR890569:1863603-1863705 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT291437 NZ_LR890569:c1863712-1863567 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
