Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1901515..1901660 | Replicon | chromosome |
| Accession | NZ_LR890564 | ||
| Organism | Klebsiella pneumoniae isolate KSB2_9A-sc-2280332 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1901551..1901653 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1901515..1901660 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JMW10_RS09205 | 1896645..1898705 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| JMW10_RS09210 | 1898709..1899368 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| JMW10_RS09215 | 1899447..1899677 | - | 231 | WP_040147502.1 | DNA polymerase III subunit theta | - |
| JMW10_RS09220 | 1899790..1900164 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| JMW10_RS09225 | 1900168..1901037 | + | 870 | WP_004175431.1 | copper homeostasis membrane protein CopD | - |
| JMW10_RS09230 | 1901054..1901392 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 1901515..1901660 | - | 146 | - | - | Antitoxin |
| - | 1901551..1901653 | + | 103 | - | - | Toxin |
| JMW10_RS09235 | 1902028..1902171 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| JMW10_RS09240 | 1902276..1903244 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| JMW10_RS09245 | 1903401..1904054 | + | 654 | WP_032415192.1 | protein-serine/threonine phosphatase | - |
| JMW10_RS09250 | 1904051..1904242 | - | 192 | WP_002911395.1 | YebW family protein | - |
| JMW10_RS09255 | 1904340..1904579 | - | 240 | WP_002911393.1 | YebV family protein | - |
| JMW10_RS09260 | 1904695..1906128 | - | 1434 | WP_032415191.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T291423 NZ_LR890564:1901551-1901653 [Klebsiella pneumoniae]
GCAAGGCGGCTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGGCTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT291423 NZ_LR890564:c1901660-1901515 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGCCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGCCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
