Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1849685..1849830 | Replicon | chromosome |
| Accession | NZ_LR890562 | ||
| Organism | Klebsiella pneumoniae isolate INF247-sc-2280148 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1849721..1849823 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1849685..1849830 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JMW77_RS09040 | 1844815..1846875 | + | 2061 | WP_064189146.1 | oligopeptidase B | - |
| JMW77_RS09045 | 1846879..1847538 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| JMW77_RS09050 | 1847617..1847847 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| JMW77_RS09055 | 1847960..1848334 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| JMW77_RS09060 | 1848338..1849207 | + | 870 | WP_064189145.1 | copper homeostasis membrane protein CopD | - |
| JMW77_RS09065 | 1849224..1849562 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 1849685..1849830 | - | 146 | - | - | Antitoxin |
| - | 1849721..1849823 | + | 103 | - | - | Toxin |
| JMW77_RS09070 | 1850198..1850341 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| JMW77_RS09075 | 1850446..1851414 | - | 969 | WP_073971755.1 | VirK/YbjX family protein | - |
| JMW77_RS09080 | 1851571..1852224 | + | 654 | WP_009484457.1 | protein-serine/threonine phosphatase | - |
| JMW77_RS09085 | 1852221..1852412 | - | 192 | WP_002911395.1 | YebW family protein | - |
| JMW77_RS09090 | 1852510..1852749 | - | 240 | WP_002911393.1 | YebV family protein | - |
| JMW77_RS09095 | 1852865..1854298 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T291403 NZ_LR890562:1849721-1849823 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT291403 NZ_LR890562:c1849830-1849685 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
