Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 522225..522370 | Replicon | chromosome |
| Accession | NZ_LR890556 | ||
| Organism | Klebsiella pneumoniae isolate INF302-sc-2280090 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 522261..522363 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 522225..522370 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JMW84_RS02475 | 517355..519415 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| JMW84_RS02480 | 519419..520078 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| JMW84_RS02485 | 520157..520387 | - | 231 | WP_040147502.1 | DNA polymerase III subunit theta | - |
| JMW84_RS02490 | 520500..520874 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| JMW84_RS02495 | 520878..521747 | + | 870 | WP_004175431.1 | copper homeostasis membrane protein CopD | - |
| JMW84_RS02500 | 521764..522102 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 522225..522370 | - | 146 | - | - | Antitoxin |
| - | 522261..522363 | + | 103 | - | - | Toxin |
| JMW84_RS02505 | 522738..522881 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| JMW84_RS02510 | 522986..523954 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| JMW84_RS02515 | 524111..524764 | + | 654 | WP_032415192.1 | protein-serine/threonine phosphatase | - |
| JMW84_RS02520 | 524761..524952 | - | 192 | WP_002911395.1 | YebW family protein | - |
| JMW84_RS02525 | 525050..525289 | - | 240 | WP_002911393.1 | YebV family protein | - |
| JMW84_RS02530 | 525405..526838 | - | 1434 | WP_032415191.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T291384 NZ_LR890556:522261-522363 [Klebsiella pneumoniae]
GCAAGGCGGCTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGGCTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT291384 NZ_LR890556:c522370-522225 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGCCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGCCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
