Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1932226..1932371 | Replicon | chromosome |
| Accession | NZ_LR890547 | ||
| Organism | Klebsiella pneumoniae isolate INF142-sc-2279977 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1932262..1932364 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1932226..1932371 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JMX11_RS09285 | 1927356..1929416 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| JMX11_RS09290 | 1929420..1930079 | - | 660 | WP_032425085.1 | exodeoxyribonuclease X | - |
| JMX11_RS09295 | 1930158..1930388 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| JMX11_RS09300 | 1930501..1930875 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| JMX11_RS09305 | 1930879..1931748 | + | 870 | WP_004189267.1 | copper homeostasis membrane protein CopD | - |
| JMX11_RS09310 | 1931765..1932103 | + | 339 | WP_016529031.1 | YebY family protein | - |
| - | 1932226..1932371 | - | 146 | - | - | Antitoxin |
| - | 1932262..1932364 | + | 103 | - | - | Toxin |
| JMX11_RS09315 | 1932739..1932882 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| JMX11_RS09320 | 1932987..1933955 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| JMX11_RS09325 | 1934112..1934765 | + | 654 | WP_004180432.1 | protein-serine/threonine phosphatase | - |
| JMX11_RS09330 | 1934762..1934953 | - | 192 | WP_002911395.1 | YebW family protein | - |
| JMX11_RS09335 | 1935051..1935290 | - | 240 | WP_002911393.1 | YebV family protein | - |
| JMX11_RS09340 | 1935406..1936839 | - | 1434 | WP_032411854.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T291357 NZ_LR890547:1932262-1932364 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT291357 NZ_LR890547:c1932371-1932226 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
