Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1858241..1858386 | Replicon | chromosome |
| Accession | NZ_LR890542 | ||
| Organism | Klebsiella pneumoniae isolate INF319-sc-2280116 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1858277..1858379 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1858241..1858386 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JMX54_RS08900 | 1853371..1855431 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| JMX54_RS08905 | 1855435..1856094 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| JMX54_RS08910 | 1856173..1856403 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| JMX54_RS08915 | 1856516..1856890 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| JMX54_RS08920 | 1856894..1857763 | + | 870 | WP_004189267.1 | copper homeostasis membrane protein CopD | - |
| JMX54_RS08925 | 1857780..1858118 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 1858241..1858386 | - | 146 | - | - | Antitoxin |
| - | 1858277..1858379 | + | 103 | - | - | Toxin |
| JMX54_RS08930 | 1858755..1858898 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| JMX54_RS08935 | 1859003..1859971 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| JMX54_RS08940 | 1860128..1860781 | + | 654 | WP_019725444.1 | protein-serine/threonine phosphatase | - |
| JMX54_RS08945 | 1860778..1860969 | - | 192 | WP_002911395.1 | YebW family protein | - |
| JMX54_RS08950 | 1861067..1861306 | - | 240 | WP_002911393.1 | YebV family protein | - |
| JMX54_RS08955 | 1861422..1862855 | - | 1434 | WP_048988537.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T291337 NZ_LR890542:1858277-1858379 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT291337 NZ_LR890542:c1858386-1858241 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
