Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1865207..1865352 | Replicon | chromosome |
| Accession | NZ_LR890527 | ||
| Organism | Klebsiella pneumoniae isolate INF361-sc-2280198 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1865243..1865345 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1865207..1865352 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JMW73_RS09125 | 1860337..1862397 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| JMW73_RS09130 | 1862401..1863060 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| JMW73_RS09135 | 1863139..1863369 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| JMW73_RS09140 | 1863482..1863856 | + | 375 | WP_201524362.1 | CopC domain-containing protein YobA | - |
| JMW73_RS09145 | 1863860..1864729 | + | 870 | WP_104158933.1 | copper homeostasis membrane protein CopD | - |
| JMW73_RS09150 | 1864746..1865084 | + | 339 | WP_016529031.1 | YebY family protein | - |
| - | 1865207..1865352 | - | 146 | - | - | Antitoxin |
| - | 1865243..1865345 | + | 103 | - | - | Toxin |
| JMW73_RS09155 | 1865722..1865862 | - | 141 | Protein_1784 | Ecr family regulatory small membrane protein | - |
| JMW73_RS09160 | 1865967..1866935 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| JMW73_RS09165 | 1867092..1867745 | + | 654 | WP_020802220.1 | protein-serine/threonine phosphatase | - |
| JMW73_RS09170 | 1867742..1867933 | - | 192 | WP_002911395.1 | YebW family protein | - |
| JMW73_RS09175 | 1868031..1868270 | - | 240 | WP_002911393.1 | YebV family protein | - |
| JMW73_RS09180 | 1868386..1869819 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 1811521..1869774 | 58253 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T291285 NZ_LR890527:1865243-1865345 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT291285 NZ_LR890527:c1865352-1865207 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
