Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 317119..317390 | Replicon | chromosome |
| Accession | NZ_LR890508 | ||
| Organism | Escherichia coli isolate MSB1_9I-sc-2280417 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 317249..317352 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 317119..317390 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JMW57_RS01540 | 313674..314336 | - | 663 | WP_001556661.1 | exodeoxyribonuclease X | - |
| JMW57_RS01545 | 314360..315016 | - | 657 | WP_000011665.1 | carbon-nitrogen hydrolase family protein | - |
| JMW57_RS01550 | 315118..315348 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| JMW57_RS01555 | 315487..315861 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| JMW57_RS01560 | 315865..316737 | + | 873 | WP_000879295.1 | copper homeostasis membrane protein CopD | - |
| JMW57_RS01565 | 316750..317091 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 317119..317390 | - | 272 | - | - | Antitoxin |
| - | 317249..317352 | + | 104 | - | - | Toxin |
| JMW57_RS01570 | 317487..318143 | + | 657 | WP_001556660.1 | protein-serine/threonine phosphatase | - |
| JMW57_RS01575 | 318144..318335 | - | 192 | WP_001338167.1 | YebW family protein | - |
| JMW57_RS01580 | 318440..318676 | - | 237 | WP_001338166.1 | DUF1480 family protein | - |
| JMW57_RS01585 | 318794..320233 | - | 1440 | WP_001351758.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T291220 NZ_LR890508:317249-317352 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT291220 NZ_LR890508:c317390-317119 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
