Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relBE/ParE-RelB
Location 4859446..4859962 Replicon chromosome
Accession NZ_LR890464
Organism Klebsiella pneumoniae isolate INF079-sc-2280008

Toxin (Protein)


Gene name relE Uniprot ID R4YAY3
Locus tag JMW83_RS23220 Protein ID WP_004178374.1
Coordinates 4859446..4859730 (-) Length 95 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID R4Y888
Locus tag JMW83_RS23225 Protein ID WP_002886901.1
Coordinates 4859720..4859962 (-) Length 81 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
JMW83_RS23195 4854842..4855150 - 309 WP_012737232.1 PTS sugar transporter subunit IIB -
JMW83_RS23200 4855235..4855408 + 174 WP_041169004.1 hypothetical protein -
JMW83_RS23205 4855411..4856154 + 744 WP_002886905.1 MurR/RpiR family transcriptional regulator -
JMW83_RS23210 4856511..4858649 + 2139 WP_004186701.1 anaerobic ribonucleoside-triphosphate reductase -
JMW83_RS23215 4858978..4859442 + 465 WP_004222151.1 anaerobic ribonucleoside-triphosphate reductase-activating protein -
JMW83_RS23220 4859446..4859730 - 285 WP_004178374.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
JMW83_RS23225 4859720..4859962 - 243 WP_002886901.1 type II toxin-antitoxin system RelB/DinJ family antitoxin Antitoxin
JMW83_RS23230 4860040..4861950 - 1911 WP_012737231.1 BglG family transcription antiterminator -
JMW83_RS23235 4861973..4863127 - 1155 WP_012737230.1 lactonase family protein -
JMW83_RS23240 4863194..4863934 - 741 WP_002886899.1 KDGP aldolase family protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(5-83)

Antitoxin

RelB antitoxin/Antitoxin DinJ

(1-80)


Sequences

Toxin        


Download         Length: 95 a.a.        Molecular weight: 11155.97 Da        Isoelectric Point: 10.3787

>T291082 WP_004178374.1 NZ_LR890464:c4859730-4859446 [Klebsiella pneumoniae]
MTYELEFDPRAWREWQKPGETVKKQFKNKLQQIVQNPRIESTRLSDLPDCYKIKLKASGYRLVYQVRDSVVVVYVIAIGK
REKAAVYHQANKRL

Download         Length: 285 bp

Antitoxin


Download         Length: 81 a.a.        Molecular weight: 9045.55 Da        Isoelectric Point: 6.3340

>AT291082 WP_002886901.1 NZ_LR890464:c4859962-4859720 [Klebsiella pneumoniae]
MATLNVRLDDKLKKEAYAVLEKLDMTPTEAVRLLFQYIAENGRMPVKSMTISDGEAALLRTVRERLENPRPGVKVSLDDL

Download         Length: 243 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB A6THG1

Antitoxin

Source ID Structure
AlphaFold DB A0A0H3GLP0

References