Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1995958..1996103 | Replicon | chromosome |
| Accession | NZ_LR890464 | ||
| Organism | Klebsiella pneumoniae isolate INF079-sc-2280008 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1995994..1996096 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1995958..1996103 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JMW83_RS09385 | 1991088..1993148 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| JMW83_RS09390 | 1993152..1993811 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| JMW83_RS09395 | 1993890..1994120 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| JMW83_RS09400 | 1994233..1994607 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| JMW83_RS09405 | 1994611..1995480 | + | 870 | WP_014907333.1 | copper homeostasis membrane protein CopD | - |
| JMW83_RS09410 | 1995497..1995835 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 1995958..1996103 | - | 146 | - | - | Antitoxin |
| - | 1995994..1996096 | + | 103 | - | - | Toxin |
| JMW83_RS09415 | 1996471..1996614 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| JMW83_RS09420 | 1996719..1997687 | - | 969 | WP_014907334.1 | VirK/YbjX family protein | - |
| JMW83_RS09425 | 1997844..1998497 | + | 654 | WP_004180432.1 | protein-serine/threonine phosphatase | - |
| JMW83_RS09430 | 1998494..1998685 | - | 192 | WP_002911395.1 | YebW family protein | - |
| JMW83_RS09435 | 1998783..1999022 | - | 240 | WP_002911393.1 | YebV family protein | - |
| JMW83_RS09440 | 1999138..2000571 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T291075 NZ_LR890464:1995994-1996096 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT291075 NZ_LR890464:c1996103-1995958 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
