Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1824836..1824981 | Replicon | chromosome |
| Accession | NZ_LR890456 | ||
| Organism | Klebsiella pneumoniae isolate INF032-sc-2279918 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1824872..1824974 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1824836..1824981 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JMV68_RS08840 | 1819966..1822026 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| JMV68_RS08845 | 1822030..1822689 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| JMV68_RS08850 | 1822768..1822998 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| JMV68_RS08855 | 1823111..1823485 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| JMV68_RS08860 | 1823489..1824358 | + | 870 | WP_064148102.1 | copper homeostasis membrane protein CopD | - |
| JMV68_RS08865 | 1824375..1824713 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 1824836..1824981 | - | 146 | - | - | Antitoxin |
| - | 1824872..1824974 | + | 103 | - | - | Toxin |
| JMV68_RS08870 | 1825350..1825493 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| JMV68_RS08875 | 1825598..1826566 | - | 969 | WP_014907334.1 | VirK/YbjX family protein | - |
| JMV68_RS08880 | 1826723..1827376 | + | 654 | WP_004175436.1 | protein-serine/threonine phosphatase | - |
| JMV68_RS08885 | 1827373..1827564 | - | 192 | WP_002911395.1 | YebW family protein | - |
| JMV68_RS08890 | 1827662..1827901 | - | 240 | WP_002911393.1 | YebV family protein | - |
| JMV68_RS08895 | 1828017..1829450 | - | 1434 | WP_021440382.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T291041 NZ_LR890456:1824872-1824974 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT291041 NZ_LR890456:c1824981-1824836 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
