Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1536579..1536724 | Replicon | chromosome |
| Accession | NZ_LR890426 | ||
| Organism | Klebsiella pneumoniae isolate INF298 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1536586..1536688 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1536579..1536724 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JMX68_RS07695 | 1532110..1533543 | + | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| JMX68_RS07700 | 1533659..1533898 | + | 240 | WP_002911393.1 | YebV family protein | - |
| JMX68_RS07705 | 1533996..1534187 | + | 192 | WP_002911395.1 | YebW family protein | - |
| JMX68_RS07710 | 1534184..1534837 | - | 654 | WP_004180432.1 | protein-serine/threonine phosphatase | - |
| JMX68_RS07715 | 1534994..1535962 | + | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| JMX68_RS07720 | 1536067..1536210 | + | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| - | 1536579..1536724 | + | 146 | - | - | Antitoxin |
| - | 1536586..1536688 | - | 103 | - | - | Toxin |
| JMX68_RS07725 | 1536847..1537185 | - | 339 | WP_002911404.1 | YebY family protein | - |
| JMX68_RS07730 | 1537202..1538071 | - | 870 | WP_004175431.1 | copper homeostasis membrane protein CopD | - |
| JMX68_RS07735 | 1538075..1538449 | - | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| JMX68_RS07740 | 1538562..1538792 | + | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| JMX68_RS07745 | 1538871..1539530 | + | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| JMX68_RS07750 | 1539534..1541594 | - | 2061 | WP_004151449.1 | oligopeptidase B | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 1526695..1610876 | 84181 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T290986 NZ_LR890426:c1536688-1536586 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT290986 NZ_LR890426:1536579-1536724 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
