Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2211006..2211277 | Replicon | chromosome |
| Accession | NZ_LR890405 | ||
| Organism | Escherichia coli isolate MSB1_7C-sc-2280317 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2211136..2211239 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2211006..2211277 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JMW09_RS10415 | 2207561..2208223 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| JMW09_RS10420 | 2208247..2208903 | - | 657 | WP_000011651.1 | carbon-nitrogen hydrolase family protein | - |
| JMW09_RS10425 | 2209005..2209235 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| JMW09_RS10430 | 2209374..2209748 | + | 375 | WP_000204705.1 | CopC domain-containing protein YobA | - |
| JMW09_RS10435 | 2209752..2210624 | + | 873 | WP_000879330.1 | copper homeostasis membrane protein CopD | - |
| JMW09_RS10440 | 2210637..2210978 | + | 342 | WP_000976481.1 | YebY family protein | - |
| - | 2211006..2211277 | - | 272 | - | - | Antitoxin |
| - | 2211136..2211239 | + | 104 | - | - | Toxin |
| JMW09_RS10445 | 2211374..2212030 | + | 657 | WP_000812712.1 | protein-serine/threonine phosphatase | - |
| JMW09_RS10450 | 2212031..2212222 | - | 192 | WP_001296140.1 | YebW family protein | - |
| JMW09_RS10455 | 2212327..2212563 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| JMW09_RS10460 | 2212681..2214120 | - | 1440 | WP_001309555.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T290888 NZ_LR890405:2211136-2211239 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT290888 NZ_LR890405:c2211277-2211006 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
