Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type IV Classification (family/domain) cptAB/Cpta(toxin)
Location 870912..871569 Replicon chromosome
Accession NZ_LR890395
Organism Klebsiella pneumoniae isolate INF044-sc-2279940

Toxin (Protein)


Gene name cptA Uniprot ID W8UCT0
Locus tag JMW67_RS04390 Protein ID WP_002916310.1
Coordinates 871159..871569 (+) Length 137 a.a.

Antitoxin (Protein)


Gene name cptB Uniprot ID W8UQ37
Locus tag JMW67_RS04385 Protein ID WP_002916312.1
Coordinates 870912..871178 (+) Length 89 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
JMW67_RS04360 866068..867501 - 1434 WP_002916322.1 6-phospho-beta-glucosidase BglA -
JMW67_RS04365 867620..868348 - 729 WP_002916321.1 MurR/RpiR family transcriptional regulator -
JMW67_RS04370 868398..868709 + 312 WP_002916319.1 N(4)-acetylcytidine aminohydrolase -
JMW67_RS04375 868873..869532 + 660 WP_002916317.1 hemolysin III family protein -
JMW67_RS04380 869683..870666 - 984 WP_002916313.1 tRNA-modifying protein YgfZ -
JMW67_RS04385 870912..871178 + 267 WP_002916312.1 FAD assembly factor SdhE Antitoxin
JMW67_RS04390 871159..871569 + 411 WP_002916310.1 protein YgfX Toxin
JMW67_RS04395 871576..872097 - 522 WP_002916308.1 flavodoxin FldB -
JMW67_RS04400 872198..873094 + 897 WP_004144729.1 site-specific tyrosine recombinase XerD -
JMW67_RS04405 873117..873830 + 714 WP_002916301.1 bifunctional protein-disulfide isomerase/oxidoreductase DsbC -
JMW67_RS04410 873836..875569 + 1734 WP_004151783.1 single-stranded-DNA-specific exonuclease RecJ -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Inner membrane protein YgfX

(3-132)

Antitoxin

Flavinator of succinate dehydrogenase

(7-79)


Sequences

Toxin        


Download         Length: 137 a.a.        Molecular weight: 16049.85 Da        Isoelectric Point: 11.4778

>T290868 WP_002916310.1 NZ_LR890395:871159-871569 [Klebsiella pneumoniae]
VVLWQSDLRISWRAQWFSLLLHGVVAALVLLVPWPLSYTPIWLLLLSLVVFDCVRSQRRIHARRGEIKLLTDSRLRWQNA
EWEILGTPWVINSGMLLRLRHVDTRRGQHLWLAADSMDAGEWRDLRRLVLQKPAQE

Download         Length: 411 bp

Antitoxin


Download         Length: 89 a.a.        Molecular weight: 10480.98 Da        Isoelectric Point: 5.1116

>AT290868 WP_002916312.1 NZ_LR890395:870912-871178 [Klebsiella pneumoniae]
MDINNKARIHWACRRGMRELDISIMPFFEYEYDTLSDADKQLFIRLLENDDPDLFNWLMNHGKPADAELQRMVTLIQTRN
RERGPVAI

Download         Length: 267 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB A0A0H3GSW7

Antitoxin

Source ID Structure
AlphaFold DB A0A0H3GY41

References