Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1938462..1938607 | Replicon | chromosome |
| Accession | NZ_LR890369 | ||
| Organism | Klebsiella pneumoniae isolate INF354-sc-2280183 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1938498..1938600 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1938462..1938607 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JMW41_RS09475 | 1933592..1935652 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| JMW41_RS09480 | 1935656..1936315 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| JMW41_RS09485 | 1936394..1936624 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| JMW41_RS09490 | 1936737..1937111 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| JMW41_RS09495 | 1937115..1937984 | + | 870 | WP_004189267.1 | copper homeostasis membrane protein CopD | - |
| JMW41_RS09500 | 1938001..1938339 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 1938462..1938607 | - | 146 | - | - | Antitoxin |
| - | 1938498..1938600 | + | 103 | - | - | Toxin |
| JMW41_RS09505 | 1938975..1939118 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| JMW41_RS09510 | 1939223..1940191 | - | 969 | WP_014907334.1 | VirK/YbjX family protein | - |
| JMW41_RS09515 | 1940348..1941001 | + | 654 | WP_009484457.1 | protein-serine/threonine phosphatase | - |
| JMW41_RS09520 | 1940998..1941189 | - | 192 | WP_002911395.1 | YebW family protein | - |
| JMW41_RS09525 | 1941287..1941526 | - | 240 | WP_002911393.1 | YebV family protein | - |
| JMW41_RS09530 | 1941642..1943075 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T290787 NZ_LR890369:1938498-1938600 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT290787 NZ_LR890369:c1938607-1938462 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
