Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1992413..1992558 | Replicon | chromosome |
| Accession | NZ_LR890356 | ||
| Organism | Klebsiella pneumoniae isolate INF231-sc-2280121 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1992449..1992551 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1992413..1992558 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JMV88_RS09660 | 1987543..1989603 | + | 2061 | WP_004148850.1 | oligopeptidase B | - |
| JMV88_RS09665 | 1989607..1990266 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| JMV88_RS09670 | 1990345..1990575 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| JMV88_RS09675 | 1990688..1991062 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| JMV88_RS09680 | 1991066..1991935 | + | 870 | WP_004891049.1 | copper homeostasis membrane protein CopD | - |
| JMV88_RS09685 | 1991952..1992290 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 1992413..1992558 | - | 146 | - | - | Antitoxin |
| - | 1992449..1992551 | + | 103 | - | - | Toxin |
| JMV88_RS09690 | 1992926..1993069 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| JMV88_RS09695 | 1993174..1994142 | - | 969 | WP_014907334.1 | VirK/YbjX family protein | - |
| JMV88_RS09700 | 1994299..1994952 | + | 654 | WP_004891053.1 | protein-serine/threonine phosphatase | - |
| JMV88_RS09705 | 1994949..1995140 | - | 192 | WP_002911395.1 | YebW family protein | - |
| JMV88_RS09710 | 1995238..1995477 | - | 240 | WP_002911393.1 | YebV family protein | - |
| JMV88_RS09715 | 1995593..1997026 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T290749 NZ_LR890356:1992449-1992551 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT290749 NZ_LR890356:c1992558-1992413 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
