Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2021498..2021769 | Replicon | chromosome |
| Accession | NZ_LR890326 | ||
| Organism | Escherichia coli isolate MINF_1A-sc-2280431 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2021629..2021731 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2021498..2021769 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JMV91_RS09860 | 2018053..2018715 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| JMV91_RS09865 | 2018739..2019395 | - | 657 | WP_000011663.1 | carbon-nitrogen hydrolase family protein | - |
| JMV91_RS09870 | 2019497..2019727 | - | 231 | WP_024176156.1 | DNA polymerase III subunit theta | - |
| JMV91_RS09875 | 2019866..2020240 | + | 375 | WP_000168737.1 | CopC domain-containing protein YobA | - |
| JMV91_RS09880 | 2020244..2021116 | + | 873 | WP_000879322.1 | copper homeostasis membrane protein CopD | - |
| JMV91_RS09885 | 2021129..2021470 | + | 342 | WP_000976474.1 | YebY family protein | - |
| - | 2021498..2021769 | - | 272 | - | - | Antitoxin |
| - | 2021629..2021731 | + | 103 | - | - | Toxin |
| JMV91_RS09890 | 2021866..2022522 | + | 657 | WP_000812749.1 | protein-serine/threonine phosphatase | - |
| JMV91_RS09895 | 2022523..2022714 | - | 192 | WP_001296140.1 | YebW family protein | - |
| JMV91_RS09900 | 2022819..2023055 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| JMV91_RS09905 | 2023173..2024612 | - | 1440 | WP_024175799.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 1942827..2037609 | 94782 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T290657 NZ_LR890326:2021629-2021731 [Escherichia coli]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT290657 NZ_LR890326:c2021769-2021498 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGATTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGATTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
