Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1856459..1856604 | Replicon | chromosome |
| Accession | NZ_LR890323 | ||
| Organism | Klebsiella pneumoniae isolate INF348-sc-2280170 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1856495..1856597 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1856459..1856604 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JMW45_RS09075 | 1851589..1853649 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| JMW45_RS09080 | 1853653..1854312 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| JMW45_RS09085 | 1854391..1854621 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| JMW45_RS09090 | 1854734..1855108 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| JMW45_RS09095 | 1855112..1855981 | + | 870 | WP_201522393.1 | copper homeostasis membrane protein CopD | - |
| JMW45_RS09100 | 1855998..1856336 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 1856459..1856604 | - | 146 | - | - | Antitoxin |
| - | 1856495..1856597 | + | 103 | - | - | Toxin |
| JMW45_RS09105 | 1856973..1857116 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| JMW45_RS09110 | 1857221..1858189 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| JMW45_RS09115 | 1858346..1858999 | + | 654 | WP_023280291.1 | protein-serine/threonine phosphatase | - |
| JMW45_RS09120 | 1858996..1859187 | - | 192 | WP_002911395.1 | YebW family protein | - |
| JMW45_RS09125 | 1859285..1859524 | - | 240 | WP_032426373.1 | YebV family protein | - |
| JMW45_RS09130 | 1859640..1861073 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T290636 NZ_LR890323:1856495-1856597 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT290636 NZ_LR890323:c1856604-1856459 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
