Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type IV Classification (family/domain) cptAB/Cpta(toxin)
Location 786042..786699 Replicon chromosome
Accession NZ_LR890317
Organism Klebsiella pneumoniae isolate INF215-sc-2280087

Toxin (Protein)


Gene name cptA Uniprot ID W8UCT0
Locus tag JMX39_RS03920 Protein ID WP_002916310.1
Coordinates 786289..786699 (+) Length 137 a.a.

Antitoxin (Protein)


Gene name cptB Uniprot ID W8UQ37
Locus tag JMX39_RS03915 Protein ID WP_002916312.1
Coordinates 786042..786308 (+) Length 89 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
JMX39_RS03890 781198..782631 - 1434 WP_002916322.1 6-phospho-beta-glucosidase BglA -
JMX39_RS03895 782750..783478 - 729 WP_002916321.1 MurR/RpiR family transcriptional regulator -
JMX39_RS03900 783528..783839 + 312 WP_004144734.1 N(4)-acetylcytidine aminohydrolase -
JMX39_RS03905 784003..784662 + 660 WP_002916317.1 hemolysin III family protein -
JMX39_RS03910 784813..785796 - 984 WP_004185555.1 tRNA-modifying protein YgfZ -
JMX39_RS03915 786042..786308 + 267 WP_002916312.1 FAD assembly factor SdhE Antitoxin
JMX39_RS03920 786289..786699 + 411 WP_002916310.1 protein YgfX Toxin
JMX39_RS03925 786706..787227 - 522 WP_110093496.1 flavodoxin FldB -
JMX39_RS03930 787328..788224 + 897 WP_004144729.1 site-specific tyrosine recombinase XerD -
JMX39_RS03935 788247..788960 + 714 WP_004185548.1 bifunctional protein-disulfide isomerase/oxidoreductase DsbC -
JMX39_RS03940 788966..790699 + 1734 WP_004149758.1 single-stranded-DNA-specific exonuclease RecJ -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Inner membrane protein YgfX

(3-132)

Antitoxin

Flavinator of succinate dehydrogenase

(7-79)


Sequences

Toxin        


Download         Length: 137 a.a.        Molecular weight: 16049.85 Da        Isoelectric Point: 11.4778

>T290615 WP_002916310.1 NZ_LR890317:786289-786699 [Klebsiella pneumoniae]
VVLWQSDLRISWRAQWFSLLLHGVVAALVLLVPWPLSYTPIWLLLLSLVVFDCVRSQRRIHARRGEIKLLTDSRLRWQNA
EWEILGTPWVINSGMLLRLRHVDTRRGQHLWLAADSMDAGEWRDLRRLVLQKPAQE

Download         Length: 411 bp

Antitoxin


Download         Length: 89 a.a.        Molecular weight: 10480.98 Da        Isoelectric Point: 5.1116

>AT290615 WP_002916312.1 NZ_LR890317:786042-786308 [Klebsiella pneumoniae]
MDINNKARIHWACRRGMRELDISIMPFFEYEYDTLSDADKQLFIRLLENDDPDLFNWLMNHGKPADAELQRMVTLIQTRN
RERGPVAI

Download         Length: 267 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB A0A0H3GSW7

Antitoxin

Source ID Structure
AlphaFold DB A0A0H3GY41

References