Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2126085..2126230 | Replicon | chromosome |
| Accession | NZ_LR890312 | ||
| Organism | Klebsiella oxytoca isolate MSB1_10D-sc-2280340 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2126120..2126223 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2126085..2126230 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JMX52_RS09920 | 2121189..2123249 | + | 2061 | WP_032726355.1 | oligopeptidase B | - |
| JMX52_RS09925 | 2123256..2123915 | - | 660 | WP_004103360.1 | exodeoxyribonuclease X | - |
| JMX52_RS09930 | 2123994..2124224 | - | 231 | WP_004103351.1 | DNA polymerase III subunit theta | - |
| JMX52_RS09935 | 2124360..2124734 | + | 375 | WP_016808306.1 | CopC domain-containing protein YobA | - |
| JMX52_RS09940 | 2124739..2125608 | + | 870 | WP_004103346.1 | copper homeostasis membrane protein CopD | - |
| JMX52_RS09945 | 2125625..2125963 | + | 339 | WP_023321222.1 | YebY family protein | - |
| - | 2126085..2126230 | - | 146 | - | - | Antitoxin |
| - | 2126120..2126223 | + | 104 | - | - | Toxin |
| JMX52_RS09950 | 2126350..2127309 | - | 960 | WP_004113762.1 | spore coat U domain-containing protein | - |
| JMX52_RS09955 | 2127321..2129654 | - | 2334 | WP_023329845.1 | fimbrial biogenesis outer membrane usher protein | - |
| JMX52_RS09960 | 2129657..2130421 | - | 765 | WP_004113760.1 | molecular chaperone | - |
| JMX52_RS09965 | 2130439..2130957 | - | 519 | WP_023321220.1 | spore coat U domain-containing protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T290604 NZ_LR890312:2126120-2126223 [Klebsiella oxytoca]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTTTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTTTTTTT
Antitoxin
Download Length: 146 bp
>AT290604 NZ_LR890312:c2126230-2126085 [Klebsiella oxytoca]
AAAAGATAAAAAAAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTTACCGTGTCAGGTTTTCCAGT
AAAAGATAAAAAAAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTTACCGTGTCAGGTTTTCCAGT
