Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1879864..1880009 | Replicon | chromosome |
| Accession | NZ_LR890307 | ||
| Organism | Klebsiella pneumoniae isolate INF188-sc-2280054 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1879900..1880002 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1879864..1880009 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JMW12_RS09170 | 1874994..1877054 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| JMW12_RS09175 | 1877058..1877717 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| JMW12_RS09180 | 1877796..1878026 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| JMW12_RS09185 | 1878139..1878513 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| JMW12_RS09190 | 1878517..1879386 | + | 870 | WP_004175431.1 | copper homeostasis membrane protein CopD | - |
| JMW12_RS09195 | 1879403..1879741 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 1879864..1880009 | - | 146 | - | - | Antitoxin |
| - | 1879900..1880002 | + | 103 | - | - | Toxin |
| JMW12_RS09200 | 1880377..1880520 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| JMW12_RS09205 | 1880625..1881593 | - | 969 | WP_074195444.1 | DUF535 family protein | - |
| JMW12_RS09210 | 1881750..1882403 | + | 654 | WP_004180432.1 | protein-serine/threonine phosphatase | - |
| JMW12_RS09215 | 1882400..1882591 | - | 192 | WP_002911395.1 | YebW family protein | - |
| JMW12_RS09220 | 1882689..1882928 | - | 240 | WP_002911393.1 | YebV family protein | - |
| JMW12_RS09225 | 1883044..1884477 | - | 1434 | WP_064190786.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T290591 NZ_LR890307:1879900-1880002 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT290591 NZ_LR890307:c1880009-1879864 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
